PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G19520.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 446aa    MW: 49101.8 Da    PI: 7.4262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G19520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-1197123127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++t+ C f++ t tCk+G +CkF H++
  LPERR01G19520.1  97 PGTKDCAFYMMTRTCKFGVSCKFDHPQ 123
                      689**********************97 PP
2zf-CCCH38.42e-12148173227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+ff++ G Ck+G++CkF+H++
  LPERR01G19520.1 148 GEPDCPFFMKAGKCKFGSKCKFNHPK 173
                      6899********************96 PP
3zf-CCCH35.71.5e-11202226327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++lC+f+a+tG Ck+ ++CkF+H++
  LPERR01G19520.1 202 EPLCSFYAKTGKCKFRAKCKFNHPK 226
                      79*********************96 PP
4zf-CCCH39.87.6e-13279305127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+f++++G Ck+G++C+F+H++
  LPERR01G19520.1 279 PGEVDCPFYMKMGSCKFGSTCRFSHPE 305
                      57899********************96 PP
5zf-CCCH39.11.2e-12361385226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++  C+f+++tG+Ck+ drCkF+H+
  LPERR01G19520.1 361 GETVCDFYMKTGFCKFSDRCKFHHP 385
                      6789********************8 PP
6zf-CCCH37.44.3e-12410432527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C f+++tG Ck+G +CkF H+p
  LPERR01G19520.1 410 VCAFYMKTGVCKFGLQCKFDHPP 432
                      7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-594123IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-496123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.05696124IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-997123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-499122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389146174IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6146173IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10148173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6151176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5152173IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-5199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746199227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5201226IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7202226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5204225IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446278306IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5282305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4284305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7358387IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7359386IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849359387IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10361385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-6364385IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5405432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427405433IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6408434IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9409432IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5410432IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSDPFHPYAH AVTGEGAAAG RSSYEIDLIA ARYGGGPLAN ISAASPAGAR RSAEVLYHQP  60
IMGSHSTVEQ IEALYSSNTT VKRPRLESSL PIYPQRPGTK DCAFYMMTRT CKFGVSCKFD  120
HPQWVPEGGI PNWKEAANLE ESYPEREGEP DCPFFMKAGK CKFGSKCKFN HPKEKVNALA  180
SGKGNEKHLS ADSSILPVRP SEPLCSFYAK TGKCKFRAKC KFNHPKDIEI PSSQNGSEDA  240
ATVEEERDIG VADDSVSVKT STPVASAQEF NSKGLPIRPG EVDCPFYMKM GSCKFGSTCR  300
FSHPERLVLN FPLVPPLDQT ILPTPETMLL NTAANFMQSF NFHSAHIPVE PEPVTYPQRP  360
GETVCDFYMK TGFCKFSDRC KFHHPIDRSA ADQSVQLTLA GLPRREDAVV CAFYMKTGVC  420
KFGLQCKFDH PPPEEAIAKV SMKGDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G19520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1121160.0AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622283.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0D9V2X80.0A0A0D9V2X8_9ORYZ; Uncharacterized protein
STRINGLPERR01G19520.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-139floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]