PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G17450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 417aa MW: 43545.3 Da PI: 5.0986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 5.1e-13 | 230 | 275 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f++Lr+llP++ K +K ++L A +Y+ksL+ LPERR01G17450.1 230 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKSLE 275 7789*********************9.....699***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.301 | 225 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-16 | 225 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.61E-12 | 230 | 278 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.8E-16 | 230 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 230 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-12 | 231 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MDDVWCSLDM AAADIAAGIH QPPPPDLHDP TFWPAFADCA ASFIAGDGVA DVGMEDMVVM 60 DDDVSGFLAG PEAEHLMMSS SSPPSSLSST RSLSIDSSGG SMSSFSLDAA AAMANMNIIP 120 NYSAAPVAHG MFSTAGGSGG GSGDHDDAIM RAMMAVISSS SASPSSSGSA SSPTPFSRAQ 180 QPSAMATQQQ LGGHVVVKSS CLAVKPEKAG GGGGRGQEAA ACGNSSQLYH MMSERKRREK 240 LNDSFHTLRS LLPPCSKKDK TTVLINAAKY LKSLETEITE LEGKNGKLER HIEGGAADAA 300 MIRARRAAHQ RAKVQISKAS AAAAEQQQVV NLTVMVMVEC DVVELVLHIL ECLRWMEDIS 360 VLSVDADTYS PQVLLKAIAS IKLQIKGGDW NEASFHEAMT KAANDATLSC APLAITA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 238 | ERKRRE |
2 | 234 | 239 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G17450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106333 | 1e-171 | AK106333.1 Oryza sativa Japonica Group cDNA clone:002-101-F10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630527.1 | 1e-157 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A0D9V277 | 0.0 | A0A0D9V277_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G17450.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10174 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 1e-22 | bHLH family protein |