PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G17360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 18955.9 Da PI: 9.9458 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 61.3 | 2.6e-19 | 55 | 141 | 18 | 100 |
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++ f +++ +f+n+++lF+ +n+l+++k++ ee+r+da++s++ye++ar dPv Ga+g+ kl+ +l++l+aela++ ++ LPERR01G17360.1 55 WRRTFRPTSRPRFQNAQRLFSIKNILRIMKKAtavgGEETRDDAVTSVIYESDAREADPVFGAAGITCKLSLELNRLAAELAAVSSQ 141 56788888899*******************9977767889******************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.94 | 31 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-15 | 56 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MFDENDDEFS SGDSKSPNTD TPQPESPPPP PPSPPTRRAR RASTSSGSAR RSARWRRTFR 60 PTSRPRFQNA QRLFSIKNIL RIMKKATAVG GEETRDDAVT SVIYESDARE ADPVFGAAGI 120 TCKLSLELNR LAAELAAVSS QVEFNLGSSA ERGGSATAAA GSRSHGPHHP PSGFEF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G17360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638299.1 | 1e-20 | LOB domain-containing protein 11 | ||||
TrEMBL | A0A0D9V266 | 1e-123 | A0A0D9V266_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G17360.1 | 1e-124 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15829 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-07 | LOB domain-containing protein 1 |