PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 176aa    MW: 18955.9 Da    PI: 9.9458
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.32.6e-195514118100
           DUF260  18 lapyfpaeqpkkfanvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                       ++ f  +++ +f+n+++lF+ +n+l+++k++     ee+r+da++s++ye++ar  dPv Ga+g+  kl+ +l++l+aela++ ++
  LPERR01G17360.1  55 WRRTFRPTSRPRFQNAQRLFSIKNILRIMKKAtavgGEETRDDAVTSVIYESDAREADPVFGAAGITCKLSLELNRLAAELAAVSSQ 141
                      56788888899*******************9977767889******************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.9431142IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-1556138IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MFDENDDEFS SGDSKSPNTD TPQPESPPPP PPSPPTRRAR RASTSSGSAR RSARWRRTFR  60
PTSRPRFQNA QRLFSIKNIL RIMKKATAVG GEETRDDAVT SVIYESDARE ADPVFGAAGI  120
TCKLSLELNR LAAELAAVSS QVEFNLGSSA ERGGSATAAA GSRSHGPHHP PSGFEF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G17360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638299.11e-20LOB domain-containing protein 11
TrEMBLA0A0D9V2661e-123A0A0D9V266_9ORYZ; Uncharacterized protein
STRINGLPERR01G17360.11e-124(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158291113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-07LOB domain-containing protein 1