PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G07860.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 502aa    MW: 55895.8 Da    PI: 7.2152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G07860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.75.1e-14170246183
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                      f+k++++s+v +  +l lp +f+++h    k  ++ ++lede+g+s++ ++   +++++  l++ W++F+ ++++k+gD+vv  
  LPERR01G07860.1 170 FVKKMLQSHVVRGFWLGLPADFCNKHlP--K-VDTVIVLEDENGNSYDTTY--LGGKQG--LSARWRGFALDHDIKVGDVVVYI 246
                      89*********************99942..3.3468***************..888888..8999****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-14164250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-18165248IPR015300DNA-binding pseudobarrel domain
CDDcd100178.60E-20168244No hitNo description
SMARTSM010194.9E-12170270IPR003340B3 DNA binding domain
PROSITE profilePS508639.671170267IPR003340B3 DNA binding domain
PfamPF023621.1E-11170246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSDLWRERWP LRFGVSGCAN FGGADGKKRG RPPGSQTIGK SKMDQKTALV YQRLALLDSS  60
SSSSSSDKDD DFEPGAEAID YDDMDDVVVV EAAPIKMLRP NQVDGEQRTV PAIPQTCYTQ  120
STDLWNGLTN TIKVPVKGQN KCVSAQGCCG SAMERAKELQ TKLPAEQPSF VKKMLQSHVV  180
RGFWLGLPAD FCNKHLPKVD TVIVLEDENG NSYDTTYLGG KQGLSARWRG FALDHDIKVG  240
DVVVYIVREK NLTTTDGVLG LMSLDACKKQ KISKEERSDN AKSGEHPKTT TNSSKGDHNY  300
TQNLVKEGID GIRFSDSEII FDDVTSLSNF NIIVDGLVID CKFLDHQRMM YYELCCSQKS  360
FLHNNLLKHL NFKLVVGVIM ETINIAEGIR ACKSDTSSHE DFLVWKKTLQ SFELLGMKVA  420
FLLKRVDDLL GLPAQPRDSS ECAKYKEIKL ARSRAGVKMK ALESKLSSLT DELKKMDAEM  480
EEMESSVRKH DVALKKIATA PW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G07860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015699237.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0D9UYM20.0A0A0D9UYM2_9ORYZ; Uncharacterized protein
STRINGLPERR01G07860.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-28B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]