PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g41860.1
Common NameHOX33, LOC4352777, Os12g0612700, OsJ_36852
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 856aa    MW: 93110 Da    PI: 6.3499
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g41860.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-183087457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  LOC_Os12g41860.1 30 YVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87
                      6789****************************************************97 PP
2START170.88.9e-541783852204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++++ vi +g  g+++
  LOC_Os12g41860.1 178 IAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDIIHVIPTGngGTIE 269
                       68999*****************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s + +v+hvdl++++++++l
  LOC_Os12g41860.1 270 LIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVL 362
                       ************999****************************9999999******************************************* PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s  + ++k++ a+l++ +
  LOC_Os12g41860.1 363 RPLYESPKILAQKMTIAALRHIR 385
                       ******************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3052488IPR001356Homeobox domain
SMARTSM003896.3E-152692IPR001356Homeobox domain
CDDcd000864.13E-162989No hitNo description
SuperFamilySSF466891.84E-162991IPR009057Homeodomain-like
PfamPF000466.5E-163087IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-183187IPR009057Homeodomain-like
CDDcd146868.32E-681120No hitNo description
PROSITE profilePS5084827.005168368IPR002913START domain
CDDcd088753.61E-68172388No hitNo description
Gene3DG3DSA:3.30.530.204.4E-24176368IPR023393START-like domain
SMARTSM002346.6E-45177387IPR002913START domain
SuperFamilySSF559612.06E-38178388No hitNo description
PfamPF018521.1E-51178385IPR002913START domain
SuperFamilySSF559614.4E-5425509No hitNo description
SuperFamilySSF559614.4E-5539612No hitNo description
SuperFamilySSF559614.4E-5648658No hitNo description
PfamPF086708.4E-47712854IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MAAAAVGGRG ERLSSSSPTA AAPQVDAGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI  60
RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LNAMNKLLME ENDRLQKQVS  120
RLVYENGYMR TQLHNPSAAT TDTSCESVVT SGQHHQQQNP AVLHPQRDAN NPAGLLAIAE  180
ETLAEFMSKA TGTAVEWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI  240
LKDRPSWYRD CRCVDIIHVI PTGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS  300
LVICERSLTQ STGGPSGPNT PNFIRAEVLP SGYLIRPCEG GGSMIYIVDH VDLDAWSVPE  360
VLRPLYESPK ILAQKMTIAA LRHIRQIAHE SSGEIPYGAG RQPAVFRTFS QRLSRGFNDA  420
VSGFPDDGWS LLSSDGSEDI TISVNSSPNK LVGSHVSPNP LFSTVGGGIL CAKASMLLQN  480
VPPALLVRFL REHRSEWADP GVDAYSAASL RASPYAVPGL RTSGFMGSQV ILPLAHTLEH  540
EEFLEVIRLE GHGFSHDEVL LSRDMYLLQL CSGVDENATS ASAQLVFAPI DESFADDAPL  600
LPSGFRVIPL DTKMDGPSAT RTLDLASALE VGPGGASRAS VEASGTCNRS VLTIAFQFSY  660
ENHLRESVAA MARSYVRAVM ASVQRVAVAI APSRLGPQIG MKHPPASPEA LTLASWIGRS  720
YRAHTGADIR WSDTEDADSP LALLWKHSDA ILCCSLKPAP MFTFANNAGL DILETTLVNL  780
QDISLEMILD DEGRKALCSE FPKIMQQGFT YLPGGVCKSS MGRQASYEQA VAWKVLSDDD  840
APHCLAFMLV NWTFM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.329840.0callus| flower| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329873920.0
Expression AtlasQ2QM96-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g41860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g41860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021830.0AK102183.1 Oryza sativa Japonica Group cDNA clone:J033086M14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620816.10.0homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A0E0JCD20.0A0A0E0JCD2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RJY10.0A0A0E0RJY1_ORYRU; Uncharacterized protein
STRINGOS12T0612700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  3. Agalou A, et al.
    A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members.
    Plant Mol. Biol., 2008. 66(1-2): p. 87-103
    [PMID:17999151]
  4. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  5. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]