PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g47920.1 | ||||||||
Common Name | LOC4351222, Os11g0706200, OsJ_34874, OSNPB_110706200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 594aa MW: 66637 Da PI: 6.3572 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 286.3 | 8.4e-88 | 214 | 583 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 + lL++cA+a ++++++ a +lL++++++a +gd+mqR+a+yf+++L+arla+ +++ly+ ++ +++ +e l+++kl+ ++ + k++ LOC_Os11g47920.1 214 RLLLIQCAQATATDNQQSAGELLKKIKQHALATGDAMQRVAHYFAKGLEARLAGRGKHLYQ-----NQMRMSLVEYLKVYKLYMAACCFTKVA 301 568***************************************************9999994.....33446699******************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 + a +I++av+g++r+Hi+D++ Gl+Wp Ll+ L sR++gpp++RiT v+ ++ +++ee g+ L++ A+e++vpf+f++++a + LOC_Os11g47920.1 302 LMFAAMTIMQAVQGKKRLHIVDYGPRCGLHWPDLLRRLGSREDGPPEVRITIVDILQPAfrPFQRIEEAGHCLSSCANEFRVPFRFQAVAAAK 394 ******************************************************99998999**************************9999* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +e++ e+L+++p+E+l+Vn + l+desv + +rd L+ + +++P+v++ + ++ ++sFl rf l yysalfd l+a+ p LOC_Os11g47920.1 395 WETVGAEDLHIEPDEVLVVNDLWSFSALMDESVFCDGpnPRDVALRNISKMQPDVFIQGITNDSY-GASFLSRFRAVLLYYSALFDILDATTP 486 ********************************98776669******************9999888.789************************ PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 r+s r +E+ +lg+ + n++acega+ +er e++++W++r ++aG+++++l+ +++++++ ++k++ + + + e+ ++l++gW++r L++ LOC_Os11g47920.1 487 RDSGLRLALEQNVLGPYALNAIACEGADLVERPEKYKQWQARNHRAGMQQLKLRPDIVDTIRDEVNKYHHKDFLLGEDGQWLLQGWMGRILFA 579 *********************************************************************888********************* PP GRAS 370 vSaW 373 SaW LOC_Os11g47920.1 580 HSAW 583 **** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 51.443 | 187 | 564 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-85 | 214 | 583 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MANPEDFFWE ALLKENEAPS PPPVFFDLPA TPLSNSDGTD PSSLDNQLLS YVSRMLMEDE 60 MGSSAAITNL QCVNRGSTEE ANNMLPGSEV VRVFSKGMGE ASKLLPRNNS FRTLETVDQV 120 SSDGHCRGRK KKNHDRDEQQ LEEELGRTSK LAALTIAGTQ EAGARELLDE LMLHAHETCI 180 KDMEKLRIDM DNEAEKKINK KDKKGSSSKV VDLRLLLIQC AQATATDNQQ SAGELLKKIK 240 QHALATGDAM QRVAHYFAKG LEARLAGRGK HLYQNQMRMS LVEYLKVYKL YMAACCFTKV 300 ALMFAAMTIM QAVQGKKRLH IVDYGPRCGL HWPDLLRRLG SREDGPPEVR ITIVDILQPA 360 FRPFQRIEEA GHCLSSCANE FRVPFRFQAV AAAKWETVGA EDLHIEPDEV LVVNDLWSFS 420 ALMDESVFCD GPNPRDVALR NISKMQPDVF IQGITNDSYG ASFLSRFRAV LLYYSALFDI 480 LDATTPRDSG LRLALEQNVL GPYALNAIAC EGADLVERPE KYKQWQARNH RAGMQQLKLR 540 PDIVDTIRDE VNKYHHKDFL LGEDGQWLLQ GWMGRILFAH SAWVRQSQDT SSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-30 | 195 | 587 | 6 | 382 | Protein SCARECROW |
5b3h_A | 1e-30 | 195 | 587 | 5 | 381 | Protein SCARECROW |
5b3h_D | 1e-30 | 195 | 587 | 5 | 381 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 240 | LKKIKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14762 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37990608 | 0.0 | ||||
Expression Atlas | Q53MB2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g47920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g47920 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137064 | 0.0 | AC137064.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616387.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | Q53MB2 | 0.0 | Q53MB2_ORYSJ; GRAS family transcription factor containing protein | ||||
STRING | OS11T0706200-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 | Representative plant | OGRP10800 | 3 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-111 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g47920.1 |
Entrez Gene | 4351222 |
Publications ? help Back to Top | |||
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