PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g05340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 1186aa MW: 134883 Da PI: 9.5618 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.5 | 3.9e-27 | 591 | 682 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA+e GFsvrk++ ++ + +g i++r+f+Cs+eg+r+e + ++++r+++a tr+gCka++++k+ + +g+w+v +++++HnH+l+ LOC_Os11g05340.1 591 QFYNKYARERGFSVRKDYCRRDRFSGIIIHRRFTCSREGFRKELYMDvSNRSREPQALTRCGCKAQFEIKLYQkEGNWYVVRFVSKHNHPLC 682 6******************************************99987788999*****************999*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50096 | 7.547 | 36 | 65 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF03101 | 1.9E-25 | 591 | 682 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.6E-37 | 804 | 898 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1186 aa Download sequence Send to blast |
MAVATAAAGL DHAGSSRLDA EVSSPVAGSG GGGGGEDGAA TKLQKMYRSY RTRRKLADTA 60 VVVEELWWQA LDYARLSYST ISFHDPNPET VASRWSRVSI IASKVGQGLS RDAKARKLAF 120 QHWIEAIDPR HRYGHNLQCY YDVWCQSQAG QPFFYWLDIG EGKDVDLPEC PRAQLKKQCI 180 KYLGPQEREQ YEYIITKGKI IHKYSEEPLD TSQGSKWIFV MSTTKRLYAG KKEKGVFQHS 240 SFLAGGATIA AGRFTAENGV IKSIWAYSGH YKPSAENLSN FMNFLEENGV DLNNVSPITA 300 IIESNPPQLI LPQNMVLENK ASGSSSQVEG AEGDNAATEQ AKPTYQRTLS GGLQSPRATI 360 DVPRKAILER VKSKRESRSY QLGHKLSLKW STGAGPRIGC VKDYPMQLRM QALEMIETVV 420 AAVAVFPHPP SQRAAAAAGA SRVPAIASSP RGRRRIEGSG RRIEPPRPPS HRGFRPSPPP 480 PGVAYNSPPL ARHIGRRLHP APLAVASNRK TPASLGQLWN IDAAALAVST PSTAVHFLVE 540 AMHEVVTKVV ILIGRFTVLC AMEGGGSSIE EQEEYATIIG MKFPSELHGF QFYNKYARER 600 GFSVRKDYCR RDRFSGIIIH RRFTCSREGF RKELYMDVSN RSREPQALTR CGCKAQFEIK 660 LYQKEGNWYV VRFVSKHNHP LCKGDQVPFL RSHRRITPAE QAKMVELRDV GLHQHQVMDI 720 MERDHGGYEG TGFTSRDMYN FFVKLKKKRI KGGDADHVLK YMQARQKDDM EFYYDYEIDQ 780 AGCLKRLFWS DPQSRIDYDA FGDVVVFDST YRVNKYNLPF IPFVGVNHHG STVIFACAVV 840 SDERVETYEW VLRQFLTCMC QKHPKSVITD GDNAMRRAIL HVFPNSDHRL CTWHIEQNMA 900 RNLSPAMLSD FRTLVHSEFD EDEFERKWVE FKIKHKVSDD NKWLKRMYNL RKKWAATYTK 960 GRVFLSMKSN QRSESLNSKL HRLLDRKMSL VILVEHYEHC LSRIHHQEAE LDAKASQSVL 1020 SYLQLEAIPS FCIARRWTMQ AKSAFPSDRY GEVYTWSDQM ERYRQLRTVA SEAFFRCSMT 1080 EESTLKVMKM LDNLMLEDDC SANCDNFEIQ FGHVVRQSMR TDIESSEKVL DPELVVPKGA 1140 PTKRMRGFLE KRKRKLLSVH EDIRRLESEH GKLHEASTSQ VTNRI* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q53PZ5 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g05340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g05340 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC116949 | 0.0 | AC116949.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence. | |||
GenBank | AC120307 | 0.0 | AC120307.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q53PZ5 | 0.0 | Q53PZ5_ORYSJ; Transposon protein, putative, unclassified, expressed |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-85 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g05340.1 |
Publications ? help Back to Top | |||
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