PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g39130.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 152aa MW: 17567.3 Da PI: 10.3177 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.9 | 3.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++g+lye++s LOC_Os10g39130.2 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 44.5 | 6.5e-16 | 79 | 143 | 6 | 70 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 ++++ +++ ++ + + L k++e L ++ R++lGe+Le s++eL+ Le +Leksl kiR kK LOC_Os10g39130.2 79 NNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKV 143 445778889999***************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.314 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.72E-40 | 3 | 79 | No hit | No description |
SuperFamily | SSF55455 | 7.33E-32 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.5E-14 | 84 | 142 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.369 | 87 | 151 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MVRGRTELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGRLYEFASA 60 PSLQKTIDRY KAYTKDHVNN KTIQQDIQQV KDDTLGLAKK LEALDESRRK ILGENLEGFS 120 IEELRGLEMK LEKSLHKIRL KKVYISYFQY S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 1 | 77 | 1 | 76 | MEF2C |
5f28_B | 3e-18 | 1 | 77 | 1 | 76 | MEF2C |
5f28_C | 3e-18 | 1 | 77 | 1 | 76 | MEF2C |
5f28_D | 3e-18 | 1 | 77 | 1 | 76 | MEF2C |
6byy_A | 4e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6byy_B | 4e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6byy_C | 4e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
6byy_D | 4e-18 | 1 | 77 | 1 | 76 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.37813 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g39130.2 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g39130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT841861 | 0.0 | CT841861.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105F20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614799.1 | 3e-99 | MADS-box transcription factor 56 | ||||
Swissprot | P0C5B2 | 1e-100 | MAD56_ORYSJ; MADS-box transcription factor 56 | ||||
TrEMBL | A0A0E0R1U6 | 1e-105 | A0A0E0R1U6_ORYRU; Uncharacterized protein | ||||
STRING | OS10T0536100-01 | 1e-98 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 2e-60 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g39130.2 |
Publications ? help Back to Top | |||
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