PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g19270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 281aa MW: 30771.1 Da PI: 6.8471 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.2 | 1.1e-12 | 151 | 225 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF +r+ ks+++ +++f+ ++ + er +++++r+gC+a l +k+++d+ w+v++ + eHnH+l+ LOC_Os10g19270.1 151 DFYNLYSFECGFGIRRGKSYTN-------TKQFRNWQQ-------LG-KPERANSSSSRCGCNALLYLKRTDDDGWYVAEHRAEHNHALS 225 6*****************9998.......334432222.......22.34556778********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-8 | 151 | 225 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDNPEIEHAA STPRGVIPST PPGAKIVAIA IADEPPPAPA RSDRVLGKRA RKDIAEGCSP 60 SPTATRAMRA GVDYSMEMHT GEFASDGVDD PQQCTPRRTP YGRAGTLALL YTPGRVTAME 120 QSMREYAIAH RGYVFDQRQG IEFDLLSEAY DFYNLYSFEC GFGIRRGKSY TNTKQFRNWQ 180 QLGKPERANS SSSRCGCNAL LYLKRTDDDG WYVAEHRAEH NHALSDSCGE KINWPSHSQI 240 DIHTKEEALS PHTETKAAAA EKGDPSGASA PLHRQNSTGV * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.54776 | 4e-55 | callus| flower| panicle | ||||
Os.74815 | 4e-55 | callus| flower| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764995 | 4e-55 | ||||
GEO | 32975826 | 4e-55 | ||||
Expression Atlas | Q339Q6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g19270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g19270 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC090482 | 1e-140 | AC090482.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0015I18, from chromosome 10, complete sequence. | |||
GenBank | AC161790 | 1e-140 | AC161790.1 Oryza sativa Japonica Group chromosome 10 clone OSJNBb0011F12, complete sequence. | |||
GenBank | AP014966 | 1e-140 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876546.1 | 1e-115 | uncharacterized protein LOC112936619 isoform X1 | ||||
TrEMBL | Q339Q6 | 0.0 | Q339Q6_ORYSJ; Retrotransposon protein, putative, Ty3-gypsy subclass, expressed |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 1e-09 | FAR1-related sequence 8 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g19270.1 |