PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g11480.1 | ||||||||
Common Name | LOC4346629, Os09g0287000, OsJ_28694, OSNPB_090287000, P0453B09.7, P0663H05.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 27023.8 Da PI: 4.5686 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.4e-20 | 102 | 151 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +grW++eIrdp+ + +r++lg+f+ta eAa+a++a +++++g+ LOC_Os09g11480.1 102 YRGVRQRP-WGRWASEIRDPV----KgARVWLGTFDTAVEAARAYDAEARRIHGH 151 9*******.**********75....44**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.787 | 101 | 158 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-37 | 101 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-12 | 102 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 102 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 102 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-22 | 102 | 159 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.08E-27 | 104 | 157 | No hit | No description |
PRINTS | PR00367 | 2.6E-11 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MCGGALIPND YGDKPPPPPS ESSEWDATTK MKKKKKRGGG GDDDWEAAFR EFIAGDDDDD 60 DGGVSMFPSG AGTMETTTEV APAAAVVERP RRRRRVRRSY PYRGVRQRPW GRWASEIRDP 120 VKGARVWLGT FDTAVEAARA YDAEARRIHG HKARTNFPPD EPPLPAPSQA PFCFLLDDDD 180 DDDGVARGNS PASSSAPDRA SACTTSSTVA SGERGDELIL LECCSDDVMD SLLAGFDVSS 240 EPRSVLGMVN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-19 | 102 | 158 | 6 | 63 | ATERF1 |
3gcc_A | 8e-19 | 102 | 158 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 96 | RPRRRRRVR |
2 | 90 | 97 | RRRRRVRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.28406 | 0.0 | leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 117233306 | 0.0 | ||||
Expression Atlas | Q6EN65 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g11480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g11480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068688 | 0.0 | AK068688.1 Oryza sativa Japonica Group cDNA clone:J013163J01, full insert sequence. | |||
GenBank | AK106057 | 0.0 | AK106057.1 Oryza sativa Japonica Group cDNA clone:001-206-F09, full insert sequence. | |||
GenBank | EU847520 | 0.0 | EU847520.1 Oryza sativa Japonica Group clone OsEP4 AP2/ERF domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610635.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | Q6EN65 | 1e-179 | Q6EN65_ORYSJ; AP2/ERF domain protein | ||||
STRING | OS09T0287000-01 | 1e-180 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 3e-19 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g11480.1 |
Entrez Gene | 4346629 |