PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g29500.2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YB
Protein Properties Length: 307aa    MW: 34884.2 Da    PI: 5.3059
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g29500.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB582.2e-1811105387
             NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecv..........sefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                       ++d  lP + + +i+k++lP + ++++da++++ ec           sefi +++se+++ c re++kti+++ +l al +lGf +y+e++++
  LOC_Os08g29500.2  11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCvvwwtivtllSEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQA 103
                       67999***************************9999434444445558*****************************************9986 PP

             NF-YB  86 yl 87 
                         
  LOC_Os08g29500.2 104 AY 105
                       54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-328150IPR009072Histone-fold
SuperFamilySSF471136.4E-2912150IPR009072Histone-fold
PfamPF008085.9E-141589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVVW WTIVTLLSEF  60
INLLSSESNE VCSREDKKTI APEHVLRALQ DLGFREYIEE VQAAYEHHKH DTLDSPKASK  120
FTGVEMTEEQ AVAEQQRMFA EARARMNNGA AKPKEPEPEA QQQTQQPPQP QLHPQPQQPL  180
QPQLQLHPQP QQQPSQLHPQ QLLHPQSQQT PQPQPQVHPQ PQQPPQLQPQ PQLLQQPQLP  240
QQLQPQSQLP PQPQQPPQLQ LQSQLHPQPQ QPPQLQPQPQ LHQQPQPQAE LQSQSQPQTE  300
HGLDSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-291214312133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.156170.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184816190.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g29500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g29500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649020.0AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds.
GenBankCT8301300.0CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650907.10.0protein Dr1 homolog isoform X1
SwissprotP495923e-76NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A0P0XFH61e-149A0A0P0XFH6_ORYSJ; Os08g0383700 protein (Fragment)
STRINGOS08T0383700-021e-132(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Representative plantOGRP34491727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-76nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]