PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g03610.1 | ||||||||
Common Name | LOC4344587, LOL4, Os08g0130100, OsJ_25929, P0582D05.124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LSD | ||||||||
Protein Properties | Length: 148aa MW: 15914.4 Da PI: 8.8745 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 27.7 | 4.5e-09 | 47 | 69 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC tlL Y rGA+++RC++C+ LOC_Os08g03610.1 47 CSGCPTLLFYNRGASNIRCPSCN 69 **********************8 PP | |||||||
2 | zf-LSD1 | 32.5 | 1.4e-10 | 85 | 109 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+ P+GA+ V+Ca C V LOC_Os08g03610.1 85 CGQCRTTLMHPPGASTVQCATCRYV 109 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.8E-6 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.1E-4 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.3E-10 | 45 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.5E-9 | 47 | 69 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.7E-11 | 82 | 112 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.9E-11 | 85 | 109 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MQDQLICSGC RRVVQYRRGV AGVCCPGCNT LTAVNPSAVA DMSELICSGC PTLLFYNRGA 60 SNIRCPSCNR LNSTRSANQI AHLTCGQCRT TLMHPPGAST VQCATCRYVN HVRDARPQTV 120 LVENPKTLDD KGKLVSNVVV GVTSWKR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14929 | 0.0 | callus| flower| leaf| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q84UR0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g03610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g03610 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120454 | 0.0 | AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence. | |||
GenBank | CT830765 | 0.0 | CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648991.1 | 1e-104 | protein LOL4 | ||||
Swissprot | Q84UR0 | 1e-105 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A0D3GW10 | 1e-103 | A0A0D3GW10_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0QDY2 | 1e-103 | A0A0E0QDY2_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8BAG4 | 1e-103 | B8BAG4_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QFD0 | 1e-103 | I1QFD0_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI08G02140.1 | 1e-104 | (Oryza rufipogon) | ||||
STRING | OS08T0130100-01 | 1e-104 | (Oryza sativa) | ||||
STRING | ORGLA08G0013100.1 | 1e-104 | (Oryza glaberrima) | ||||
STRING | OBART08G01910.1 | 1e-104 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 | Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 1e-40 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g03610.1 |
Entrez Gene | 4344587 |
Publications ? help Back to Top | |||
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