PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g08520.1 | ||||||||
Common Name | ARF20, OJ1046_F10.103, OJ1506_G02.20, Os07g0183100, OsJ_022407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 729aa MW: 79662.2 Da PI: 7.4993 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.9 | 5.1e-20 | 120 | 232 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.......TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvlt.......kGWkeFvkangLkegD 78 f+k+l+p+dv++++ lvlp eh +++++ ++d++g+++e+ +i++kk++ry+l+ +GW++Fvka++L ++D LOC_Os07g08520.1 120 FEKQLSPADVTSNA-LVLPAGA--EHvlppldiaAYQTAR--LFDVRDLRGKRFEFVHIWDKKRCRYMLGdlgvndnDGWRGFVKAKRLATRD 207 99***********9.9999774..5659999887666555..78999********************************************** PP EEEEE....E-SSSEE..EEEEE-S CS B3 79 fvvFk....ldgrsefelvvkvfrk 99 +vvF+ dg+ ++el+v+v+r+ LOC_Os07g08520.1 208 TVVFMrrggGDGDGDGELLVGVRRA 232 *****7765566799999**99997 PP | |||||||
2 | B3 | 77.8 | 1.1e-24 | 436 | 541 | 1 | 99 |
EEEE-..-HHHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+l+psd+ ++ +++v+pk+ a+eh ++ + + +l++++++g +We+ +++ +++s++++l++GW+ Fvka++L++gD+v+F+ LOC_Os07g08520.1 436 FDKKLSPSDAAANgggsgALFVIPKPSAAEHVLP-RIP-DLRVTNLQGGRWEFGHTWsdadtDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFM 526 899******999988888899**********776.455.9********************99999999************************* PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +r ++e++v+v+rk LOC_Os07g08520.1 527 R-RRPGGEPLVGVRRK 541 4.44**********98 PP | |||||||
3 | Auxin_resp | 28.7 | 5.8e-11 | 255 | 331 | 2 | 76 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvek.alk..vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpn 76 + a++ ++Fev+Y+Pr +t eFvv+++++ +++ ++ +G+ + ++++ ++ ++sGtv+ +l p r + LOC_Os07g08520.1 255 WLAMQGVTPFEVTYYPREGTFEFVVSRDEYIGfSFSpfYPFVPGTTVHLRMNPLQIAQ-SISGTVRTFDHLRPWRMLE 331 66778889********************9875333344999***********998875.569******9999966555 PP | |||||||
4 | Auxin_resp | 60 | 9.8e-21 | 558 | 634 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 a+ +as++++F+v+Y+P+++t+eFvv++e+ve + ++++G+R+++ ++ +d+++r++ +Gtv++v++ +S+Wr+L+ LOC_Os07g08520.1 558 AWLDASSAQPFRVTYCPWQGTAEFVVRREEVEGSP--PLAPGTRVRLLMNPDDARRRSQppvYGTVRDVHC-------RSEWRMLE 634 67889*****************************9..*********************99999******99.......899**995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-21 | 113 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-14 | 115 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.67E-10 | 118 | 211 | No hit | No description |
PROSITE profile | PS50863 | 8.572 | 119 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-17 | 120 | 232 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0031 | 120 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-5 | 259 | 334 | IPR010525 | Auxin response factor |
Gene3D | G3DSA:2.40.330.10 | 8.2E-19 | 430 | 542 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-15 | 431 | 542 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.07E-12 | 435 | 540 | No hit | No description |
SMART | SM01019 | 2.9E-7 | 436 | 542 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.715 | 441 | 542 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-14 | 451 | 541 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.0E-7 | 562 | 633 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MAQPPDAAAA AAVPPPVVID RDVWHACAVP YSGVLPGVGT LVYYIPHGHI EQCAEDPALL 60 LSRLPDPIHP VPCTVADLVL DVDAESGEAY ATISLLPGSH DDTTARRQVP AHGEPGFRFF 120 EKQLSPADVT SNALVLPAGA EHVLPPLDIA AYQTARLFDV RDLRGKRFEF VHIWDKKRCR 180 YMLGDLGVND NDGWRGFVKA KRLATRDTVV FMRRGGGDGD GDGELLVGVR RAPRARGGHH 240 PRPGVEDNKV VSEVWLAMQG VTPFEVTYYP REGTFEFVVS RDEYIGFSFS PFYPFVPGTT 300 VHLRMNPLQI AQSISGTVRT FDHLRPWRML EVDWDQAASP ISYRIHRQVN SWQVLRQPQP 360 AATTSAVRIR DAIVATPQVQ IMALPRPPPP TTTTGMVPSD DSYAMISLFP GDCYVTHRPL 420 PAARDPVGGQ REFCFFDKKL SPSDAAANGG GSGALFVIPK PSAAEHVLPR IPDLRVTNLQ 480 GGRWEFGHTW SDADTDRRSS SHTLAAGWSA FVKAKRLCVG DTVIFMRRRP GGEPLVGVRR 540 KPHGGMPVGI PDKHVADAWL DASSAQPFRV TYCPWQGTAE FVVRREEVEG SPPLAPGTRV 600 RLLMNPDDAR RRSQPPVYGT VRDVHCRSEW RMLEVDWDRD SPLAPTMNRR VNSWQVQPVQ 660 LALPPQGSDE EAAAATTSTA HAGDATTSAP SLALQLQTMA SSSSSSAPII PSRGSAFRIV 720 NPRDGSQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-25 | 18 | 657 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A3BH85 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g08520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g08520 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003835 | 0.0 | AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02. | |||
GenBank | AP003861 | 0.0 | AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882775.1 | 0.0 | putative auxin response factor 20 | ||||
Swissprot | A3BH85 | 0.0 | ARFT_ORYSJ; Putative auxin response factor 20 | ||||
TrEMBL | A0A0E0HXG9 | 0.0 | A0A0E0HXG9_ORYNI; Auxin response factor | ||||
STRING | ONIVA07G04100.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16962 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.4 | 4e-25 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g08520.1 |
Publications ? help Back to Top | |||
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