PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g39906.1 | ||||||||
Common Name | LOC4341453, Os06g0601000, OSNPB_060601000, P0457B11.16, P0486H12.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HB-other | ||||||||
Protein Properties | Length: 317aa MW: 35126.6 Da PI: 4.6753 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 3.1e-09 | 248 | 295 | 6 | 53 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k qle+Le+++ +++ p+ +++ + + ++L+ + + WF rR LOC_Os06g39906.1 248 RLKKVQLETLERVYSRTKRPTNTMISSIVQVTSLPRKTIVKWFEDRRE 295 67899*****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 2.23E-6 | 243 | 294 | No hit | No description |
SMART | SM00389 | 8.1E-4 | 246 | 304 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-9 | 246 | 297 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-9 | 247 | 295 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.1E-7 | 248 | 295 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.167 | 253 | 300 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002229 | Biological Process | defense response to oomycetes | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009682 | Biological Process | induced systemic resistance | ||||
GO:0009787 | Biological Process | regulation of abscisic acid-activated signaling pathway | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway | ||||
GO:2000071 | Biological Process | regulation of defense response by callose deposition | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MAAMVGAPLA VAAAAAAPGA RVFLARPLLR RSPRGVACAL RRRPSKYKNK IQNEEVVVED 60 DIGGGGEDDD DALEALFKQL EEDLKNDDLS VEDDDDGISE EDMARFEQEL AEAIGDIADA 120 DESGEGSSLG SEAYGNDEKT DEIKRPELKN WQLKRLARAL KIGRRKTSIK NLAGELGLDR 180 TLVIELLRNP PPKLLFMSDS LPDEDPSKPE IKEIEPSPVV DNADVTETKP QTELPVHVMC 240 AEWSSQKRLK KVQLETLERV YSRTKRPTNT MISSIVQVTS LPRKTIVKWF EDRREQDGVP 300 DHRVAFKRSL SETIAS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26397 | 1e-169 | flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q69XL0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g39906.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g39906 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071330 | 0.0 | AK071330.1 Oryza sativa Japonica Group cDNA clone:J023089G15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643619.1 | 0.0 | protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 | ||||
Swissprot | Q8H0V5 | 1e-64 | OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 | ||||
TrEMBL | A0A0E0HT68 | 0.0 | A0A0E0HT68_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PZU8 | 0.0 | A0A0E0PZU8_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8B4C6 | 0.0 | B8B4C6_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q69XL0 | 0.0 | Q69XL0_ORYSJ; Os06g0601000 protein | ||||
STRING | ORUFI06G21620.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0601000-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA06G23990.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10700 | 35 | 42 | Representative plant | OGRP6927 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11270.1 | 1e-60 | overexpressor of cationic peroxidase 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g39906.1 |
Entrez Gene | 4341453 |
Publications ? help Back to Top | |||
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