PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g32530.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 527aa    MW: 61177.2 Da    PI: 8.3358
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g32530.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.36.6e-1556142191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHel 89 
                       +fY++YA+++GF+++ks+++ks        ++ +C++egk+ ++  +  +++r+++++++gCka +k++ ++     +  + + +el+HnH+l
  LOC_Os06g32530.1  56 NFYKTYAYHAGFDIKKSRTHKS-------IHEVCCTREGKHVSKVAD-CDRERKKPSKKMGCKAYVKLRHNYdggvLSSVQYDVVELQHNHPL 140
                       6*****************9999.......6789**********9999.899999*****************953222234455677******9 PP

              FAR1  90 ap 91 
                       +p
  LOC_Os06g32530.1 141 TP 142
                       85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1056142IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.803447483IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MHQAGDICSR GMPPCLDDND IATPTPNRVY SHGPCVPPHM VPTKGMAFPT YDDPYNFYKT  60
YAYHAGFDIK KSRTHKSIHE VCCTREGKHV SKVADCDRER KKPSKKMGCK AYVKLRHNYD  120
GGVLSSVQYD VVELQHNHPL TPSPSAVKPM RAHKNHDDTA MKIVDIMQES HVPQSCIMGV  180
LYDLHGGLDK IPFTTRDVEN RKAANVRMEN ANDINKLLEF FNECTLQNPK FYWDAQLDEN  240
DQDPAMAVAV GRCFPGIIHR LCRWHILNCH SDPLNTIFER NEQIEPDMML CINQTYKPYE  300
FETSWDQFLK RYDLEGCPIM KALYDIREKW VPAFFRKDYC GRMTSTQRSE SMNKLVKHKR  360
MLEVITDRKE KEAAETRACS GKPMLAVRWP FVIQMSRLYT RAAFRLFEEA LQDSTDLRIS  420
QDHDFRNGWI VSHTKRSEKH DWCQKQFKLI ADVDAGVFTC ECKQWEHTCM FCTHMLRAFV  480
HVQLEKIPAA YILKRYTKKV KSDVPFDRHD REATGPMVFK KITGQT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g32530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g32530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054680.0AP005468.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0020P04.
GenBankAP0057730.0AP005773.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0085C03.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882211.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ6AU280.0Q6AU28_ORYSJ; Putative FAR1 protein
STRINGORGLA03G0393200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP649725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-34FAR1-related sequence 5