PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g06970.1 | ||||||||
Common Name | CBF4, DREB1D, ERF116, Os06g0165600, OSJNBa0015I14.27, P0680A03.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27668.2 Da PI: 10.7473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.1 | 2.8e-15 | 40 | 90 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVrw+ grWv+ +r+p g + rf++g+ +taee a+ ++aa+++l g LOC_Os06g06970.1 40 FRGVRWRGCAGRWVCKVRVP---GsRGDRFWIGTSDTAEETARTHDAAMLALCG 90 8******************9...5445***********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.3E-12 | 39 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-22 | 39 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-14 | 39 | 100 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.884 | 39 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-11 | 39 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.12E-21 | 40 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEKNTAASGQ LMTSSAEATP SSPKRPAGRT KFQETRHLVF RGVRWRGCAG RWVCKVRVPG 60 SRGDRFWIGT SDTAEETART HDAAMLALCG ASASLNFADS AWLLHVPRAP VVSGLRPPAA 120 RCATRCLQGH RRVPAPGRGS TATATATSGD AASTAPPSAP VLSAKQCEFI FLSSLDCWML 180 MSKLISSSRA KGSLCLRKNP ISFCMVTNSY TALLLEYIIL QMNSMIVLIH ELSKYQVFLL 240 LTMITHHLFQ WRR* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 12581491 | 0.0 | ||||
Expression Atlas | Q6J1A5 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g06970.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:15656983}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g06970 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023482 | 0.0 | AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03. | |||
GenBank | AF243384 | 0.0 | AF243384.1 Oryza sativa CRT/DRE binding factor (CBF) mRNA, complete cds. | |||
GenBank | AP002536 | 0.0 | AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY345235 | 0.0 | AY345235.1 Oryza sativa transcription factor RCBF4 mRNA, complete cds. | |||
GenBank | AY502052 | 0.0 | AY502052.1 Oryza sativa (indica cultivar-group) CRT/DRE binding protein gene, complete cds. | |||
GenBank | AY607691 | 0.0 | AY607691.1 Oryza sativa (japonica cultivar-group) cold-induced CBF/DREB transcription factor mRNA, complete cds. | |||
GenBank | AY785895 | 0.0 | AY785895.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1D (DREB1D) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649414.1 | 3e-52 | dehydration-responsive element-binding protein 1J | ||||
Swissprot | Q6J1A5 | 0.0 | DRE1D_ORYSJ; Dehydration-responsive element-binding protein 1D | ||||
Swissprot | Q6REU5 | 0.0 | DRE1D_ORYSI; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A0E0HLM2 | 1e-120 | A0A0E0HLM2_ORYNI; Uncharacterized protein | ||||
STRING | OS06T0165600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP15392 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 1e-29 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g06970.1 |