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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os05g49930.1 |
Common Name | LOC4339687, OJ1268_B08.12, Os05g0574900, OSNPB_050574900 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
GRAS |
Protein Properties |
Length: 501aa MW: 52995 Da PI: 6.2953 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os05g49930.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 357.2 | 2.4e-109 | 78 | 454 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
v+l+++cA a+++gd ++a L+ +e+ p+ + + R+ ++f+ ALa+rl+ ++ + pp + + e+ ++ f+e+ P+l
LOC_Os05g49930.1 78 VNLMVTCAGAIQAGDYAAAAGSLSDAREIfaKMPTTrTGIGRVLTHFADALAERLFPAFPQ---SAPPPPPP---RGEQRELFRGFYEAGPYL 164
6899************************98644444499*****************94443...33444444...4555567899******** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
kf+hl+aNqaIlea+eg++ vH+iDf ++ G+QWp+L+qaLa Rp+gpp lRiTg+g++++g+++el+ +g rLa+fA+++ vpf f+ ++a+
LOC_Os05g49930.1 165 KFAHLAANQAILEAFEGCNSVHVIDFALTDGIQWPSLIQALAVRPGGPPFLRITGIGPHAAGNRDELRDVGLRLAEFARSCSVPFAFRGIAAD 257
**********************************************************9999******************************* PP
GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
+l+ l++++++v pgEa+a+n+vlqlhrll ++ + + ++d vL+ v s++P+v++vveqeadhn++s+lerf+++l yy+++fdsle
LOC_Os05g49930.1 258 QLDGLRPWMFQVAPGEAVAINSVLQLHRLLVDQDAAAAasfpaPIDGVLDWVASMNPRVFTVVEQEADHNKSSLLERFTNSLFYYASMFDSLE 350
*****************************9544333333455599***********************************************9 PP
GRAS 273 aklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
a + + + + +++l+ ei ++v+ eg++r+erhe++ +W erl++ G++++pl+ + qa + lr++++ g+ v+e+ g l+l+W+
LOC_Os05g49930.1 351 AISRHGGgdGAGNPLAEAYLQGEIADIVSREGSSRVERHEQMPRWVERLRRGGMTQLPLGATGLWQAAMQLREFSGAGFGVQENGGFLTLTWH 443
87433334599999******************************************************************************* PP
GRAS 364 drpLvsvSaWr 374
+++L+s+SaWr
LOC_Os05g49930.1 444 SQRLYSASAWR 454
**********8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0042538 | Biological Process | hyperosmotic salinity response |
GO:2000033 | Biological Process | regulation of seed dormancy process |
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 501 aa
Download sequence Send
to blast |
MAQFGGFGGW SAMDVAAAAA AALGNVSGAV YHADPAAAVY ASLVPGMAVV PGRAPPSAVQ 60 IEAARRWKEL EKMALRSVNL MVTCAGAIQA GDYAAAAGSL SDAREIFAKM PTTRTGIGRV 120 LTHFADALAE RLFPAFPQSA PPPPPPRGEQ RELFRGFYEA GPYLKFAHLA ANQAILEAFE 180 GCNSVHVIDF ALTDGIQWPS LIQALAVRPG GPPFLRITGI GPHAAGNRDE LRDVGLRLAE 240 FARSCSVPFA FRGIAADQLD GLRPWMFQVA PGEAVAINSV LQLHRLLVDQ DAAAAASFPA 300 PIDGVLDWVA SMNPRVFTVV EQEADHNKSS LLERFTNSLF YYASMFDSLE AISRHGGGDG 360 AGNPLAEAYL QGEIADIVSR EGSSRVERHE QMPRWVERLR RGGMTQLPLG ATGLWQAAMQ 420 LREFSGAGFG VQENGGFLTL TWHSQRLYSA SAWRATAGKK MTMMASGAAD AMEESQNSNT 480 NGGGGGSSGG GHGALNQIMQ *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC098832 | 0.0 | AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence. |
GenBank | AK107256 | 0.0 | AK107256.1 Oryza sativa Japonica Group cDNA clone:002-125-G08, full insert sequence. |
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |