PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g57600.1 | ||||||||
Common Name | LOC4337362, Os04g0671800, OsJ_015854, OSJNBb0004A17.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 712aa MW: 80160 Da PI: 5.2362 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 3.9e-06 | 116 | 138 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +f + G C GdrC F Hgp LOC_Os04g57600.1 116 VPCYYFKK-GNCLKGDRCAFYHGP 138 689*9999.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.953 | 31 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0064 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 1.9E-11 | 33 | 88 | No hit | No description |
PROSITE profile | PS50103 | 10.991 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.45 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 112 | 139 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 113 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.77E-5 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.5 | 117 | 137 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-5 | 117 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MEADGAAAAA AAGEASTEAG ARPLAPEEEA LRRNTDCVYF LASPLTCKKG NECDFRHSDN 60 ARMNPRDCWY WLNSNCLNPK CPFRHPPIDG MFGAPTTGMP AVSSHYAPFN SGKQLVPCYY 120 FKKGNCLKGD RCAFYHGPQS VGNNPSEQVV KVSSLPLEQL QTQKNDLLGI KDSVQSTNSI 180 QHGAPITNER GKTAVDRSTV NSARTATVAI PVASNAMSCP KSEKVKSSTP AALKESFTTS 240 SGGDHPECYQ NHFPMDSDPV RDWNQSYEMP PADDLPQNSR EADELLGESS PGFDVLVDND 300 ADGAAYLHDE DFGGDMYPVE DYEYAPADFD VRAHHERERF NGMDEQDQMG HMYDGYERKR 360 RRSSERSMER PFHSERRFLQ RDRDRVEMDG SDLRHRLRRR RINESSLAIS PERNGEQRRR 420 DERYRERAHG HRSHRDHHQS SRGSTLSSRL QGRIKLPGRS PDRVDTRSEK ERDRRRLRDR 480 LSPVRRTEFQ GTRHREAGQH EEQTQRRSSE LALGSRNADG QHLTKDVPDS HNFPHRKNSR 540 DSSKANGSVE PEASLDFEGP KPLSVILQRK REAAWANGTS ACSPKQDKSA EVSHRQASLA 600 EAEKEGDNII SSDEYKSGSG DEEFRDEGHI PVEGHGQSSS HGDKLEAEDI IEVDPVENQD 660 ADNYDQREGE SYYEPIEGQD YKSDDENAYE DDDEEYDDDD DFARKVGVVF S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 357 | 361 | RKRRR |
2 | 357 | 362 | RKRRRS |
3 | 473 | 480 | RRRLRDRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12216 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980880 | 0.0 | ||||
Expression Atlas | Q0J952 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g57600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g57600 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070857 | 0.0 | AK070857.1 Oryza sativa Japonica Group cDNA clone:J023066C11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636581.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q0J952 | 0.0 | C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | F1DK83 | 0.0 | F1DK83_ORYSJ; C3H-related transcription factor (Fragment) | ||||
STRING | OS04T0671800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6604 | 32 | 41 | Representative plant | OGRP2455 | 12 | 20 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g57600.1 |
Entrez Gene | 4337362 |
Publications ? help Back to Top | |||
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