PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g53990.1 | ||||||||
Common Name | LOC4337107, Os04g0631600, OsJ_16289, OSJNBb0015D13.17, OSNPB_040631600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 45811.3 Da PI: 7.5731 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.3e-05 | 329 | 366 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L LOC_Os04g53990.1 329 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 366 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.935 | 317 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-11 | 327 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.64E-5 | 327 | 370 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.1E-8 | 327 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MGDHQMMHAA PAAMYNGGGG TTSSHGVWWS NAVGVPAAAT CSTTTELAGY TAWSSALAAG 60 YDGMVADNGG KQAKSTTTAS SESPGNNSSV TFQEPASIPD PAAVAAVPQP GLAGFTDWTQ 120 PFMNNGAGLH EFLQDGHHDM SASSLMNHSS NNLALQQAGH HHELLSSFGS DLLLSPTSPY 180 GGFQSSLLRS LMEPTAKQQQ QQPALAGLQQ YHQYQQQMGH APAAAAKFAQ AVGARDSLQF 240 TNDAPFWNPS AGFGMPAAVA VAAAAAQDQA SVRSAKRSSP APPRAAATLA LKTAMEGVGD 300 SSSVITKKET AFKKPRLETP SPLPTFKVRK EKLGDRITAL QQLVSPFGKT DTASVLHETI 360 EYIKFLHDQV GALSAPYLKN GAHQVPHLKN SSPDKSKHGE ISLKGRGLCL VPISSTFAVA 420 SEVPVELWTP FGANFIR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.25006 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979390 | 0.0 | ||||
Expression Atlas | Q0J9U0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g53990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g53990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069366 | 0.0 | AK069366.1 Oryza sativa Japonica Group cDNA clone:J023012B21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633969.1 | 0.0 | transcription factor bHLH112 | ||||
TrEMBL | Q0J9U0 | 0.0 | Q0J9U0_ORYSJ; OSJNBb0015D13.17 protein | ||||
STRING | OS04T0631600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 | Representative plant | OGRP14841 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 2e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g53990.1 |
Entrez Gene | 4337107 |