PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g43910.1 | ||||||||
Common Name | ARF10, LOC4336419, Os04g0519700, OsJ_014843, OSJNBa0019D11.3, OSJNBb0061C13.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 696aa MW: 75244.7 Da PI: 6.6117 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.2 | 7.3e-24 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++++ + + +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+ + LOC_Os04g43910.1 121 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysSEPPVQ--SVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFM--R 209 89*********************999****987656666..5************************************************..5 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++ +v+++r+ LOC_Os04g43910.1 210 DEGGNIHVGLRRA 222 699*******996 PP | |||||||
2 | Auxin_resp | 118.7 | 4.9e-39 | 276 | 359 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa++a+t+++Fev+Y+Prast+eF+v+++ v++a+ v++++GmRfkmafetedss++++ +Gtv+gv+++dpvrWp+S+Wr+L+ LOC_Os04g43910.1 276 AATRATTGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQASDPVRWPQSPWRLLQ 359 78999*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-36 | 111 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.94E-29 | 114 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.90E-19 | 120 | 221 | No hit | No description |
PROSITE profile | PS50863 | 12.435 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-22 | 121 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-21 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.1E-33 | 276 | 359 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.88 | 609 | 689 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MELAGPTEGD GGGSVDSQLW AACAGSMSSV PPVGAAVYYF PQGHAEQASA AVDLSSARVP 60 PLVPCRVVAV RFMADAESDE VFAKIRLVPL RPGDAVVDVG EAAAAEARRE EENSRPRPTS 120 FAKTLTQSDA NNGGGFSVPR FCAETIFPEL DYSSEPPVQS VCAKDVHGVE WTFRHIYRGT 180 PRRHLLTTGW SPFVNKKQLT AGDSIVFMRD EGGNIHVGLR RAKRGFCSIG GDDESLSSIP 240 GWDQYRGLMR RNATATATGG RTPPKGKVPP ENVLTAATRA TTGQPFEVLY YPRASTPEFC 300 VRAAAVRTAM AVQWCPGMRF KMAFETEDSS RISWFMGTVA GVQASDPVRW PQSPWRLLQV 360 TWDEPELLQN VKRVCPWLVE LVSSMPNLHL PSFSPPRKKP RNPPYAELPL EGQIFTGPVF 420 PPNPMAHDHH HHHGFPFLPF PDSSAQPAGI QGARHAQFAS PFPEFHIGNL QPNLMLYAGI 480 RLPPADRAAP APRPPRIIIS TDLTIGSPGK PDDAACSPSS GGKKIDDTKP RGFLLFGQAI 540 LTEEQIKNGN SDGRPASPNW DAEKAPNTSE GSDSGVTQGS PTKNTTPSWS LPYFGGNNIS 600 RASEYELNPG QCKVFVESET VGRSLDLSAL SSFEELYACL SDMFSIGSDE LRSHLVYRSP 660 AGEVKHAGDE PFCAFVKSAR KLRILTDAGS DNLGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-80 | 1 | 380 | 37 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.8374 | 0.0 | callus| flower| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986004 | 0.0 | ||||
Expression Atlas | Q7XKK6 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g43910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g43910 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662958 | 0.0 | AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence. | |||
GenBank | AL731629 | 0.0 | AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633845.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q01I35 | 0.0 | ARFJ_ORYSI; Auxin response factor 10 | ||||
Swissprot | Q7XKK6 | 0.0 | ARFJ_ORYSJ; Auxin response factor 10 | ||||
TrEMBL | B8AS27 | 0.0 | B8AS27_ORYSI; Auxin response factor | ||||
STRING | OBART04G18910.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g43910.1 |
Entrez Gene | 4336419 |
Publications ? help Back to Top | |||
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