PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g41820.1 | ||||||||
Common Name | LOC4336273, OsJ_15316, OSJNBa0067K08.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 470aa MW: 50079.3 Da PI: 8.1567 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.1 | 5.8e-11 | 270 | 328 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l++l+ l+se+ LOC_Os04g41820.1 270 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSEN 328 9***********************************************99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.9E-18 | 266 | 330 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.139 | 268 | 331 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.2E-11 | 270 | 325 | No hit | No description |
Pfam | PF00170 | 2.2E-9 | 270 | 328 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.01E-11 | 270 | 325 | No hit | No description |
CDD | cd14703 | 1.13E-23 | 271 | 320 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MAESRIFGGL KPTKSRLLGP TIRGPPPNGA ATHAPRRILF SFSPESQWLG QSSTRACLPP 60 LRSPCLPAPS AASPAYPRLA SSAASASAPA RLRSRITLPG GRSPVPPMDP AASAAESSSL 120 SSRDVAAMPD SPPRRAARHR RAQSEILLGA ALPDDIAFDA DLGVVGEVGG GGGDDYEEEE 180 EDDEEEEMEG AGGSRMFEMF LEAGGKLETP EPAAPLPPPP ARPRHQHSMS MDGSTSLASS 240 AAGVAGRMGA DAKKAISDAK LAELALVDPK RAKRILANRQ SAARSKERKM RYIAELERKV 300 QTLQTEATTL SAQLSMLQRD TTGLTSENSD LKIRVQTMEQ QVRLQDALND RLRDEIQQLK 360 VATGQVNANC GKVGNFGLSS FGGANPQGYQ RSHIQSLLAA QQLQQLQIHS QHQQQQMHLQ 420 QHHHLSTVQQ QLLQEGLPLP GDLKMKGIVA ASHAQNAGAS ESHALRSEP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51967 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32974447 | 0.0 | ||||
Expression Atlas | Q7XUJ7 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g41820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g41820 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606627 | 0.0 | AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633411.1 | 0.0 | transcription factor RF2a-like | ||||
Swissprot | Q04088 | 2e-83 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | A0A0E0PB01 | 0.0 | A0A0E0PB01_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q7XUJ7 | 0.0 | Q7XUJ7_ORYSJ; OSJNBa0067K08.2 protein | ||||
STRING | ORUFI04G18730.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12302 | 29 | 37 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 3e-65 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g41820.1 |
Entrez Gene | 4336273 |
Publications ? help Back to Top | |||
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