PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g08600.1
Common NameOSJNBb0089K06.6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 306aa    MW: 33768.1 Da    PI: 8.7486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g08600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.5e-05189211123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++C + F++   L  H+++H
  LOC_Os04g08600.1 189 YTCGYCRREFRSAQALGGHMNVH 211
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-6187216No hitNo description
PfamPF139121.0E-5189213IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.51189216IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAFRQWIGEV GWWTGCTWRG AAKPEAASAR CGSDYTSGND WPEFCGKWQS SGLRRGDGFG  60
AQESSGRWEI DIGMHGEGYY RSRRCGMRLK EAEIAGEVGR RCGAHQFSVS TVLELLIYGL  120
LAQLSVKLAL HIVQPHYKSI SKSMESRSAR EHGHGHLHQQ HQRPWSCSFG FSWPPLQRSP  180
PPSSSSSSYT CGYCRREFRS AQALGGHMNV HRRERARLRQ FPNPRPHPLP NLNLSPPPPP  240
PPPPPPPQQQ QQCYCPGDRP AIVYSFFSTA AAAMAATKGL EVDLELGVGG GMEEGLDLEL  300
RLGCS*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XNZ8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g08600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g08600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630130.0AL663013.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880331.11e-114transcriptional regulator SUPERMAN
TrEMBLQ7XNZ80.0Q7XNZ8_ORYSJ; OSJNBb0089K06.6 protein
STRINGOS04T0168100-001e-113(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.19e-16C2H2 family protein