PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g58250.1 | ||||||||
Common Name | LOC4334424, Os03g0796900, OSJNBa0094F01.19, OSNPB_030796900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 426aa MW: 44252.9 Da PI: 4.8606 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 42 | 2e-13 | 234 | 286 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + +rrkq+NRe+ArrsR RK a + eLe v +L eN++L +l ++++ LOC_Os03g58250.1 234 RLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYN 286 789***************************************99988888776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-17 | 230 | 294 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.392 | 232 | 286 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.3E-10 | 232 | 286 | No hit | No description |
SuperFamily | SSF57959 | 1.31E-9 | 234 | 284 | No hit | No description |
Pfam | PF00170 | 1.2E-10 | 234 | 285 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 1.2E-52 | 301 | 418 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 426 aa Download sequence Send to blast |
MERVFSVEEI SDPFWVPPPP PQSAAAAQQQ GGGGVASGGG GGVAGGGGGG NAMNRCPSEW 60 YFQKFLEEAV LDSPVPNPSP RAEAGGIRGA GGVVPVDVKQ PQLSAAAAAA ATTSAVVDPV 120 EYNAMLKQKL EKDLAAVAMW RASGTVPPER PGAGSSLLNA DVSHIGAPNS IGGNATPVQN 180 MLSGPSGGSG SQLVQNVDVL VKQPTSSSSR EQSDDDDMEG EAETTGTARP ADQRLQRRKQ 240 SNRESARRSR SRKAAHLNEL EAQVSQLRVE NSSLLRRLAD VNQKYNDAAV DNRVLKADVE 300 TLRAKVKMAE DSVKRVTGMN ALFPAASDMS SLSMPFNSSP SEATSDAAVP IQDDPNNYFA 360 TNNDIGGNNN YMPDIPSSAQ EDEDFVNGAL AAGKIGRTAS LQRVASLEHL QKRMCGGPAS 420 SGSTS* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.136 | 0.0 | callus| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32978606 | 0.0 | ||||
Expression Atlas | Q7X9A8 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g58250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g58250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK068589 | 0.0 | AK068589.1 Oryza sativa Japonica Group cDNA clone:J013153H07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631619.1 | 0.0 | bZIP transcription factor RISBZ2-like | ||||
Swissprot | Q7X9A8 | 0.0 | RSBZ2_ORYSJ; bZIP transcription factor RISBZ2 | ||||
TrEMBL | Q10C28 | 0.0 | Q10C28_ORYSJ; BZIP transcription factor family protein, expressed | ||||
STRING | OS03T0796900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3488 | 38 | 78 | Representative plant | OGRP1839 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28770.2 | 1e-34 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g58250.1 |
Entrez Gene | 4334424 |
Publications ? help Back to Top | |||
---|---|---|---|
|