PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g53670.2 | ||||||||
Common Name | LOC4330901, OJ1534_E09.1-1, Os02g0776700, OsJ_08581, OSJNBb0013K01.35-1, OSNPB_020776700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 622aa MW: 69141.4 Da PI: 5.1686 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 504 | 551 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I r Rt ++k++w+++ LOC_Os02g53670.2 504 AWTLCEVVKLVDGVARYGAGKWSEIRRLAFssySYRTSVDLKDKWRNL 551 7***************************999**99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-12 | 497 | 555 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.899 | 497 | 556 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-7 | 501 | 554 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.26E-17 | 503 | 553 | No hit | No description |
SuperFamily | SSF46689 | 4.52E-14 | 503 | 556 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MEVGGPQDAL DNRSDDNDFD KNDNSDPVVY QLVRVEGDGT LIPATEDEVL QFETFLHDEK 60 VDDDLPSIDD VTHVEEYFTN DCIVKKPEFE EGPSKLDTAD VQTQKLDAGL EEDRLCTLND 120 SIVLPSNCSA VHDQQLDKLN TEQGANIIAQ QDNASTETTK STVLNDLSSD KEKADACSKP 180 VNEASAGQSV SGVTSSVPDF SILKGEVCLD DLTMRELQEA FRATFGRQTT VKDKLWLKRR 240 IAMGLINSCD VPSSGCVVRD YKVIAMGAKQ EIPVVEAIPK MELEANLVRD QVMNPGHERD 300 LPSSLSYHSE EQQRSSKRLK RVPTDNDEPQ VTIFAEQGTT KRIRKPTKRY IEELSDIDTH 360 ESTGRLSSPG KRHVYDEVLL RPRIAPLHEV DSLSTAYPTR EDTLGGCSVH VPYVSRMRRG 420 RPRSNFIPFL DPEPSVECTE APAADVVNLE KEGERKNHKN TGKKGVHVET SCEKDVQGLQ 480 DKDFCDSDDN PKTKRGGKRK HHRAWTLCEV VKLVDGVARY GAGKWSEIRR LAFSSYSYRT 540 SVDLKDKWRN LIRASQTQLS TENDGVCPRK SNPSAIPIPV SILLRVKKLA EMQSQAGDVR 600 VPIKFSGQST TVVQGKVSGF L* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14008 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980418 | 0.0 | ||||
Expression Atlas | Q6YZ61 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g53670.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g53670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070394 | 0.0 | AK070394.1 Oryza sativa Japonica Group cDNA clone:J023049B09, full insert sequence. | |||
GenBank | FJ940213 | 0.0 | FJ940213.1 Oryza sativa Japonica Group clone KCS120F03 Myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625825.1 | 0.0 | uncharacterized protein LOC4330901 isoform X2 | ||||
TrEMBL | Q6YZ61 | 0.0 | Q6YZ61_ORYSJ; MYB transcription factor-like | ||||
STRING | OS02T0776700-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 4e-80 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g53670.2 |
Entrez Gene | 4330901 |
Publications ? help Back to Top | |||
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