PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g45200.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Dof | ||||||||
Protein Properties | Length: 367aa MW: 36903.9 Da PI: 8.7349 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.3e-39 | 61 | 122 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss LOC_Os02g45200.4 61 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 122 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-31 | 57 | 119 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-33 | 63 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 65 | 119 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 67 | 103 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MEEMLMGANP NPNGSSNQPP PPPSSAASAQ RPIAPPAAGA AAGAGAAGAG AGTERRARPQ 60 KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS 120 SSSVVPSAAA SASTSAAVSG SVPVGLAAKN PKLMHEGAQD LNLAFPHHHG RALQPPEFTA 180 FPSLESSSVC NPGGNLAAAN GAGGRGSVGA FSAMELLRST GCYVPLPQMA PLGMPAEYAA 240 AGFHLGEFRM PPPPQQQQQQ QAQTVLGFSL DTHGAGAGGG SGVFGACSAG LQESAAGRLL 300 FPFEDLKPVV SAAAGDANSG GDHQYDHGKN QGGGGGVIGG HEAPGFWNSS MIGNGSSNGG 360 GGGGSW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4183 | 0.0 | callus| flower| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764062 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g45200.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g45200 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028130 | 0.0 | AB028130.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-9. | |||
GenBank | AK287447 | 0.0 | AK287447.1 Oryza sativa Japonica Group cDNA, clone: J043016O04, full insert sequence. | |||
GenBank | AP005885 | 0.0 | AP005885.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0657H12. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627551.1 | 0.0 | dof zinc finger protein 2 isoform X2 | ||||
Swissprot | B9F1L8 | 0.0 | DOF2_ORYSJ; Dof zinc finger protein 2 | ||||
TrEMBL | A0A0D9YWB9 | 0.0 | A0A0D9YWB9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0NJ43 | 0.0 | A0A0E0NJ43_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM02G28130.2 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI02G29040.2 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 8e-43 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g45200.4 |
Publications ? help Back to Top | |||
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