PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g70310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 382aa MW: 39776.8 Da PI: 6.1432 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 8.7e-12 | 196 | 238 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L LOC_Os01g70310.1 196 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 238 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.764 | 189 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.23E-16 | 192 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-9 | 195 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-14 | 195 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-16 | 196 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.77E-13 | 196 | 242 | No hit | No description |
CDD | cd04873 | 8.24E-5 | 310 | 370 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MDEAEAAAAA AKMDELAGGG GGGGGDWSYL AADALAAASF TAFPFHHHHH HHHRDVLSAS 60 TPSSLLLNMD AATAAAMFDF QAAFPSSSVP PPPPTTTAAL PPFHDFASSN PFDDAPPPFL 120 APPGQKLGFL GPPGGAFGGG MGWDDDDEIE QSVDASSMGV SASLENAAPV AAGGGGGGGG 180 GGGRGKKKGM PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ 240 RINDLHNELE SAPSSSLTGP SSASFHPSTP TLQTFPGRVK EELCPTSFPS PSGQQATVEV 300 RMREGHAVNI HMFCARRPGI LMSTLRALDS LGLGIEQAVI SCFNGFAMDV FRAEQCRDGP 360 GLGPEEIKTV LLHSAGLQNA M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 191 | 248 | 6 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 203 | KKKGMPAKNLMAERRRRKK |
2 | 197 | 204 | ERRRRKKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.13595 | 0.0 | callus| flower| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987803 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g70310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g70310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102594 | 0.0 | AK102594.1 Oryza sativa Japonica Group cDNA clone:J033098G23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651003.1 | 0.0 | transcription factor ICE1 | ||||
TrEMBL | A0A0E0FYA4 | 0.0 | A0A0E0FYA4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G48650.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1646 | 37 | 101 | Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 4e-94 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g70310.1 |