PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g42970.1 | ||||||||
Common Name | LOC4326652, Os01g0616400, P0686E09.13-1, P0686E09.13-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 463aa MW: 50358.1 Da PI: 7.2677 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.9 | 5.4e-11 | 107 | 132 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++ t tCk+G++CkF H++ LOC_Os01g42970.1 107 GEKDCAFYMMTRTCKFGGSCKFDHPQ 132 7889********************97 PP | |||||||
2 | zf-CCCH | 40.7 | 4.1e-13 | 158 | 183 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tG Ck+G++CkF+H++ LOC_Os01g42970.1 158 GEPDCPFFMKTGKCKFGSKCKFNHPK 183 6899********************96 PP | |||||||
3 | zf-CCCH | 31.1 | 4e-10 | 212 | 236 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC+f+a+tG Ck+ + CkF+H++ LOC_Os01g42970.1 212 EPLCSFYAKTGKCKFRAMCKFNHPK 236 79*********************96 PP | |||||||
4 | zf-CCCH | 39.8 | 7.4e-13 | 289 | 314 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f++++G Ck+G++C+F+H+ LOC_Os01g42970.1 289 PGEVDCPFYMKMGSCKFGSTCRFNHP 314 57899********************9 PP | |||||||
5 | zf-CCCH | 36.1 | 1.1e-11 | 372 | 393 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG+Ck+ drCkF+H+ LOC_Os01g42970.1 372 VCDFYMKTGFCKFADRCKFHHP 393 7********************8 PP | |||||||
6 | zf-CCCH | 33.8 | 5.6e-11 | 427 | 449 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C f+++tG Ck+G +CkF H+p LOC_Os01g42970.1 427 VCAFYMKTGVCKFGMQCKFDHPP 449 7********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0038 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.615 | 105 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-5 | 106 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 107 | 132 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-7 | 156 | 183 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.23 | 156 | 184 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 158 | 183 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 161 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 162 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-5 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 209 | 237 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-6 | 212 | 236 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 214 | 235 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-7 | 288 | 315 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 288 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-10 | 290 | 314 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-5 | 292 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-4 | 294 | 313 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-7 | 366 | 395 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-7 | 367 | 394 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.859 | 367 | 395 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 371 | 393 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-6 | 372 | 393 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-5 | 422 | 449 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 422 | 450 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.03E-5 | 425 | 450 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 426 | 449 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 427 | 447 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 463 aa Download sequence Send to blast |
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR 60 SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC 120 KFGGSCKFDH PQWVPEGGIP NWKEQAANVE ESYPEQEGEP DCPFFMKTGK CKFGSKCKFN 180 HPKEKVNALA SGNTNDKHLI ADSSILPVRP SEPLCSFYAK TGKCKFRAMC KFNHPKDIEI 240 PSSQNEPESA VTVEGETDIG SAADSVSAKM QTPVAAAQEF NSKGLPMRPG EVDCPFYMKM 300 GSCKFGSTCR FNHPDRLVLN FPLPLGQTIL PTPESMLLNS SANFMQGFDF HAAHMPVGPG 360 PVTYPQRPGA TVCDFYMKTG FCKFADRCKF HHPIDRSAPD PSANWEPAEE SVQLTLAGLP 420 RREDAVVCAF YMKTGVCKFG MQCKFDHPPP QEAIAKVSNS GS* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.1486 | 0.0 | callus| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37988779 | 0.0 | ||||
Expression Atlas | Q5ZDJ6 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g42970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g42970 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK111682 | 0.0 | AK111682.1 Oryza sativa Japonica Group cDNA clone:J013159G03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622282.1 | 0.0 | zinc finger CCCH domain-containing protein 8 isoform X1 | ||||
Swissprot | Q5ZDJ6 | 0.0 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | I1NPN8 | 0.0 | I1NPN8_ORYGL; Uncharacterized protein | ||||
STRING | OS01T0616400-02 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 | Representative plant | OGRP6754 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-141 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g42970.1 |
Entrez Gene | 4326652 |
Publications ? help Back to Top | |||
---|---|---|---|
|