PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g39330.1 | ||||||||
Common Name | B1112D09.6, LOC4326315, Os01g0575200, OsJ_02312, OSNPB_010575200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 455aa MW: 46854.5 Da PI: 5.1101 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.7e-13 | 267 | 312 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f++Lr+llP++ K +K ++L A +Y+ksL+ LOC_Os01g39330.1 267 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKSLE 312 7789*********************9.....699***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.28E-16 | 261 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.301 | 262 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-10 | 267 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.96E-12 | 267 | 315 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.8E-16 | 267 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-12 | 268 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MDEVWCSLDS MPADIAAGIH QPPPPDLHDP SFWPAFADCA ASFIAGGGGD NACFDELMAG 60 GSSGDTRMVA MDDGDDGSGF LVGDAEAEHL MLSSSSPSSL SSGRSLSIDS AGSMSSFSLD 120 AAAALAMSTL AVPHPYPPPV AHGMFASGDG GGGGGGAVDD HEDAIMRAMM AVISSASASP 180 SSSGGSASSP TPFSRDSGAH HQPAGQPAMA APQQPRGGNG GHVVVKSSSS SGGLAVPMDQ 240 KPGGGGRGRQ QEEAAAASAT NSSQLYHMMS ERKRREKLND SFHTLRSLLP PCSKKDKTTV 300 LINAAKYLKS LETEITELEG TNTKLEKHIA GGGGAADAAM RARRAQQRAK VQISKAADSQ 360 SQQLVSLTVM VMVECDVVEL VLHILECLRW MKEISVLSVY ADTYSPQLLL KAIANIKLQI 420 VGGDWNEASF HEAMTKAAND ATISCAPLAI TAAQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 270 | 275 | ERKRRE |
2 | 271 | 276 | RKRREK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.98094 | 0.0 | callus| flower| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116013039 | 0.0 | ||||
Expression Atlas | Q8S0C6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g39330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g39330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106333 | 0.0 | AK106333.1 Oryza sativa Japonica Group cDNA clone:002-101-F10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630527.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | B8AAS9 | 0.0 | B8AAS9_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q8S0C6 | 0.0 | Q8S0C6_ORYSJ; Basic helix-loop-helix (BHLH) family protein-like | ||||
STRING | OS01T0575200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10174 | 31 | 36 | Representative plant | OGRP12009 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 2e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g39330.1 |
Entrez Gene | 4326315 |