PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g04800.1 | ||||||||
Common Name | LOC4325479, Os01g0141000, P0480E02.32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | RAV | ||||||||
Protein Properties | Length: 366aa MW: 39280.4 Da PI: 10.3208 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42 | 2.3e-13 | 67 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a++ a+++++g LOC_Os01g04800.1 67 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 115 78****9888.8*********......44*************************98 PP | |||||||
2 | B3 | 95.2 | 4.5e-30 | 182 | 280 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++ LOC_Os01g04800.1 182 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrraassdsasAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTI 274 89****************************99998888755566999********************************************** PP EEEE-S CS B3 81 vFkldg 86 vF+++ LOC_Os01g04800.1 275 VFSRSA 280 **9664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-8 | 67 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-17 | 67 | 123 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.47E-13 | 68 | 123 | No hit | No description |
SMART | SM00380 | 9.2E-24 | 68 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-21 | 68 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.049 | 68 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-39 | 177 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-30 | 179 | 291 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.49E-28 | 180 | 279 | No hit | No description |
SMART | SM01019 | 1.7E-23 | 182 | 294 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-27 | 182 | 280 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.902 | 182 | 294 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSRPAA 60 AAAQQSSRYK GVVPQPNGRW GAQIYERHAR VWLGTFPDEE AAARAYDVAA LRYRGRDAAT 120 NFPGAAASAA ELAFLAAHSK AEIVDMLRKH TYADELRQGL RRGRGMGARA QPTPSWAREP 180 LFEKAVTPSD VGKLNRLVVP KQHAEKHFPL RRAASSDSAS AAATGKGVLL NFEDGEGKVW 240 RFRYSYWNSS QSYVLTKGWS RFVREKGLRA GDTIVFSRSA YGPDKLLFID CKKNNAAAAT 300 TTCAGDERPT TSGAEPRVVR LFGVDIAGGD CRKRERAVEM GQEVFLLKRQ CVVHQRTPAL 360 GALLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-49 | 179 | 292 | 11 | 115 | DNA-binding protein RAV1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27299 | 0.0 | callus| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 117227181 | 0.0 | ||||
Expression Atlas | Q9AWS0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g04800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g04800 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065008 | 0.0 | AK065008.1 Oryza sativa Japonica Group cDNA clone:J013001E21, full insert sequence. | |||
GenBank | AP002913 | 0.0 | AP002913.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480E02. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT828886 | 0.0 | CT828886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA058B11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622259.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
Swissprot | Q9AWS0 | 0.0 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | A0A0E0MR56 | 0.0 | A0A0E0MR56_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G02680.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0141000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 | Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-76 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g04800.1 |
Entrez Gene | 4325479 |
Publications ? help Back to Top | |||
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