PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0773s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 230aa    MW: 26252.6 Da    PI: 9.3541
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0773s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.79.9e-2469111143
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 
                          d+ep rCrRtDGKkWRCsr++ +++k+CErH+hrg+srs++ k
  Kalax.0773s0002.1.p  69 DPEPSRCRRTDGKKWRCSRQAFGDSKYCERHMHRGKSRSTRNK 111
                          79*************************************9987 PP
2QLQ49.81e-171043235
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35
                         +FTaaQ+q+L++Q+l +K ++++ P+Pp+L++ i
  Kalax.0773s0002.1.p 10 PFTAAQWQELEHQALFFKFMVSGIPIPPDLIFSI 43
                         9*****************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.8E-9945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.9011045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-131043IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.3269115IPR014977WRC domain
PfamPF088791.8E-1970111IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLGGGSSRYP FTAAQWQELE HQALFFKFMV SGIPIPPDLI FSINGKRSQQ PQHIGWTCFQ  60
MGLSNHKIDP EPSRCRRTDG KKWRCSRQAF GDSKYCERHM HRGKSRSTRN KPLESNNTND  120
NKPPPPLLHL QTFPSKSALE SAGTQSNLSS SLTTCDMTHK PVKDSNFLTF LGIDSGWNQH  180
KKVACDLSRD DESCVVERTE KRQRRTMYHQ FIEESPPQEK TDSWLNLVI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047491.12e-52PREDICTED: growth-regulating factor 1 isoform X1
RefseqXP_010047492.12e-52PREDICTED: growth-regulating factor 1 isoform X2
TrEMBLA0A059CNF05e-51A0A059CNF0_EUCGR; Uncharacterized protein
STRINGXP_010047491.18e-52(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-42growth-regulating factor 5