PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0671s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 384aa    MW: 41158.9 Da    PI: 8.8398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0671s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20180229255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Kalax.0671s0001.1.p 180 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 229
                          7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-38180243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-33180238IPR001471AP2/ERF domain
PfamPF008473.2E-14180229IPR001471AP2/ERF domain
PROSITE profilePS5103225.712180237IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22180238IPR016177DNA-binding domain
PRINTSPR003679.8E-12181192IPR001471AP2/ERF domain
CDDcd000181.18E-14188239No hitNo description
PRINTSPR003679.8E-12203219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MCPFKVANPE DIDYLASRAA SEAAGDENEQ QQRQPGSMLS DYSQAREMSA MVSALTHVVS  60
GQRPSGDQWL YARDSGAGGL LYASSDRQSG FVSSSSGQKR SRMDQQSRAV ASAAPPDDQN  120
IRQSYQRTTF PSSADFGSQP SSSAVASASS TQAAQIATRS SGGNATQNPT MEETGERRRR  180
YRGVRQRPWG KWAAEIRDPH KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENV  240
RSVPAPLQIA TGSAPIRTAA ILPDYATVRP SFSPQLQQFR SQPELGEYAQ YSQLLQQGGG  300
GHSSSTSMLD QFVISNLQPP TSTAHGSSSF SGAYPQLLSN EQSHQWGFHG DAGGGTTGLE  360
VIKKSSPPSW TEQSSQYPSS SSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23179242468ATERF1
3gcc_A4e-23179242468ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-15ethylene response factor 110