PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ERF

Protein Properties

Length: 272aa MW: 29732.3 Da PI: 9.4488

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0656s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.1	1.4e-20	66	115	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a+++++g Kalax.0656s0003.1.p 66 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDNAALRFKG 115 7******.******94....45*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	7.3E-33	65	124	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.684	66	123	IPR001471	AP2/ERF domain
CDD	cd00018	9.24E-33	66	124	No hit	No description
Pfam	PF00847	3.8E-13	66	115	IPR001471	AP2/ERF domain
SMART	SM00380	2.3E-38	66	129	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-22	66	124	IPR016177	DNA-binding domain
PRINTS	PR00367	1.1E-11	67	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-11	89	105	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSVMISALTQ VMATNNNSQT APSSQGSNAA AAASAAAPRF TVTQDHASPR HSAQDQQDSS 60 AVRKRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE DAAIAYDNAA LRFKGTKAKL 120 NFPERVQGGN NPTTTHYTNH NVERSSRNTH TPHQQIMQRP LGPHPQQQPP QQPSAVAYPH 180 LDEYAQILAS NEVEFPLYSS NLLNQQQAGQ FQGSHSSSSS SSMFGSSGYS DNSLLQQQQQ 240 QQQQQFGYYP QWYGGSSGPS DFPGHGNDFS G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-26	63	129	2	69	ATERF1
3gcc_A	2e-26	63	129	2	69	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269\|PubMed:23616605}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269\|PubMed:23616605}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010044889.1	1e-57	PREDICTED: ethylene-responsive transcription factor ERF113
Swissprot	Q9FH54	2e-43	EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBL	A0A2N9IST0	9e-57	A0A2N9IST0_FAGSY; Uncharacterized protein
STRING	XP_010044889.1	5e-57	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61890.1	6e-34	ERF family protein

Link Out ? help Back to Top
Phytozome	Kalax.0656s0003.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]