PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ERF

Protein Properties

Length: 250aa MW: 26901.4 Da PI: 5.4811

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0496s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.9	7e-20	98	148	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k +r++lg+++t+ eAa+a++aa+ k++g Kalax.0496s0040.1.p 98 KYRGVRRRP-WGKYAAEIRDP---ArKGARVWLGTYDTPMEAARAYDAAAFKMRG 148 8******.******8...4445***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.1E-31	98	157	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.895	98	156	IPR001471	AP2/ERF domain
SMART	SM00380	4.4E-37	98	162	IPR001471	AP2/ERF domain
CDD	cd00018	1.10E-20	98	156	No hit	No description
Pfam	PF00847	8.7E-15	98	148	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-23	98	158	IPR016177	DNA-binding domain
PRINTS	PR00367	2.8E-13	99	110	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-13	138	158	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MASVEEASFL DSIQHFLLTD DFASESSLQT LLSDSGLTSS VGSSRHSVAA VKTETEVSDE 60 SWVSTGGNGL PPKPSRLSSR KPVALKVAIP AGAEEDVKYR GVRRRPWGKY AAEIRDPARK 120 GARVWLGTYD TPMEAARAYD AAAFKMRGSK AIVNFPLEVG KVRTAAEEEE VAAESVDVPA 180 RKRRKEVDME IGDGEKVMVK VEDASVSAAA MPLTPSSWAA WESEEVKGIF TVPPLSPYTP 240 LGHPQLRVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-27	99	159	6	66	ATERF1
3gcc_A	4e-27	99	159	6	66	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	185	RKRRKE

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q8VY90	2e-53	EF105_ARATH; Ethylene-responsive transcription factor ERF105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51190.1	9e-52	ERF family protein

Link Out ? help Back to Top
Phytozome	Kalax.0496s0040.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Moore M,Vogel M,Dietz K The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana. Plant Signal Behav, 2014. 9(10): p. 976479 [PMID:25482793] Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation. Plant Cell Environ., 2017. 40(1): p. 108-120 [PMID:27723941] König K,Vaseghi MJ,Dreyer A,Dietz KJ The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves. Physiol Plant, 2018. 162(3): p. 262-273 [PMID:28984358]