PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0448s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 325aa    MW: 35576.2 Da    PI: 8.0224
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0448s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.43.3e-2573117145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Kalax.0448s0018.1.p  73 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 117
                          79****************************************986 PP
2QLQ60.45.2e-211147137
                  QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         s+FT +Q+q+L++Q+l+yKyL+a++ +Pp+L+++iqk
  Kalax.0448s0018.1.p 11 SPFTVSQWQELEHQALIYKYLMAGLAIPPDLVLPIQK 47
                         89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-111147IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.9E-151246IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4161247IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76273117IPR014977WRC domain
PfamPF088793.7E-2174116IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MLRSSSSASA SPFTVSQWQE LEHQALIYKY LMAGLAIPPD LVLPIQKSFE AVSSRFFTHP  60
TMGYCSFYGK KIDPEPGRCR RTDGKKWRCS KDAYPDSKYC ERHMHRGRNR SRKPVESPQP  120
VSQLASSTVT SLNVNAGGAG TGNATVFPSL PLQAFGGGMQ SSSLSSGTNH QSHHFNEDHI  180
PYGIPSKDYR YVHGLKPETG EHNFFGDASA SNRSLQIENA WSMLPSQVSA FTSSKPSSNS  240
SSLLQSDYTQ NPLFSPDFAS SDSAKQGNSL RPFFDEWPKA RDSWSGLEEE RSNPGSYSTT  300
HLSMSIPMGS SDFSATSSQS PNEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024171491.11e-150growth-regulating factor 4-like
TrEMBLA0A2P6SQ101e-148A0A2P6SQ10_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGGorai.003G057700.11e-147(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-45growth-regulating factor 5