PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0441s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 349aa    MW: 38440.8 Da    PI: 4.8222
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0441s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-2068118155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a+ +++g
  Kalax.0441s0015.1.p  68 CDYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAEEAALAYDEAAIAMYG 118
                          68*****999.**********8...3.35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.84E-3268127No hitNo description
PfamPF008478.6E-1568118IPR001471AP2/ERF domain
PROSITE profilePS5103222.31369126IPR001471AP2/ERF domain
SMARTSM003802.4E-3569132IPR001471AP2/ERF domain
PRINTSPR003671.0E-107081IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2170127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-3170127IPR001471AP2/ERF domain
PRINTSPR003671.0E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSTSGNLDKT KTRIRKRTGT KSVAETIAKW KQYNVMLDSE GIPVRRVPAK GSKKGCMKGK  60
GGPENYHCDY RGVRQRTWGK WVAEIREPNR GSRLWLGTFP TAEEAALAYD EAAIAMYGLY  120
ARLNMPDRDT KKEVFEENSK DSSTIVSTCC SGSSSTASNN SDALKEEKLS CGASDNMRRH  180
CQRKLVVPKL ENDARSSNQN LAVPFVMDEA GSKNIEAEAR EDLAVSMDVN QGDGVDEWLQ  240
MQSYSMVELF DAHGLLSEIE NNPLKTDTRQ DEGHPLTDQF SALNSSNTKL VGPVDLSSQP  300
QNPDAGLFEG IDVGLQGNSL DLSFLQPGRQ EDEAQCAFDY TSLFDLDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1970128362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-31DRE-binding protein 2A