PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0262s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 191aa    MW: 20506.7 Da    PI: 4.758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0262s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.7e-172269355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r  +++g+Wv+eIr+p+    +  r++lg+f t+e+Aa+a++aa+++l+g
  Kalax.0262s0019.1.p 22 YRGIR--SRSGKWVSEIREPR----KaSRIWLGTFPTPEMAAAAYDAAALALKG 69
                         99996..678*********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-272178IPR001471AP2/ERF domain
PROSITE profilePS5103220.5472177IPR001471AP2/ERF domain
SMARTSM003808.2E-292183IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-182279IPR016177DNA-binding domain
PfamPF008473.4E-92269IPR001471AP2/ERF domain
CDDcd000181.85E-162279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSHTTSSSSS SSSSSIHSTI TYRGIRSRSG KWVSEIREPR KASRIWLGTF PTPEMAAAAY  60
DAAALALKGR EAVLNFPASV GTYPVPTTSS AADIRACAVA AAKQKKAEIA SVDHKQGSAI  120
DDDDDNDDDD KNGVNGGGKG LSEFWDEDEI FRMPNLLADM AEGMMVSPPR MVPEPSPESP  180
VNYERLWSYF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1422771572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033804.18e-56PREDICTED: ethylene-responsive transcription factor ERF026-like
RefseqXP_015867319.17e-55ethylene-responsive transcription factor ERF027-like
RefseqXP_015901879.17e-55ethylene-responsive transcription factor ERF027-like
RefseqXP_024453070.19e-56ethylene-responsive transcription factor ERF027
SwissprotQ9FJ905e-43ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A200R0B23e-54A0A200R0B2_9MAGN; AP2/ERF domain
TrEMBLB9GW612e-54B9GW61_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12120.14e-55(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.12e-36ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]