PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ERF

Protein Properties

Length: 224aa MW: 25141.3 Da PI: 6.5162

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0248s0051.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.4	3e-17	80	130	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s y GVr ++ +g+++AeIrd + ng r++lg+f+tae Aa a+++a+++ + Kalax.0248s0051.1.p 80 SSYIGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDTAESAALAYDQAALASR 130 6799****.******44465..********************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.66E-21	80	140	IPR016177	DNA-binding domain
CDD	cd00018	5.91E-27	80	138	No hit	No description
Pfam	PF00847	4.7E-12	80	131	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.272	81	139	IPR001471	AP2/ERF domain
SMART	SM00380	5.7E-32	81	145	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.4E-28	81	140	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-9	82	93	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-9	105	121	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MDSSFPSYFP YPVDNTITTF PSLHQQQQHC LFQFPGQVLP YEDCPSYWNY VRACYVQNNS 60 SPENDFINLD EAVRLGKEQS SYIGVRKRPW GKFAAEIRDS TRNGVRVWLG TFDTAESAAL 120 AYDQAALASR GPMALLNFSE EVVRESLREL RCTVEENGSP VLALKKKHSK KKKRAARVAR 180 RREKIGGGGG DVDDGEMRLS GRDHVLVLED LGADYLEELL SLC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-25	69	141	1	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019181066.1	2e-51	PREDICTED: ethylene-responsive transcription factor 1B-like
Swissprot	A0A3Q7I5Y9	4e-48	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A3Q8TBB5	8e-49	A0A3Q8TBB5_FRAAN; Transcription factor ERF86
STRING	XP_009589439.1	9e-49	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	2e-25	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Kalax.0248s0051.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]