PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0229s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 280aa    MW: 30431.7 Da    PI: 9.8354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0229s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.3e-203484256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         ++ GVr+++ +grWvAeI+d +   +r r +lg+++t+eeAa+a+++a+++l+ge
  Kalax.0229s0012.1.p 34 RFVGVRQRP-SGRWVAEIKDSC---QRVRLWLGTYDTPEEAARAYDEAARALRGE 84
                         589******.7*********42...35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.3363491IPR001471AP2/ERF domain
CDDcd000189.93E-313493No hitNo description
Gene3DG3DSA:3.30.730.106.8E-283492IPR001471AP2/ERF domain
SMARTSM003805.4E-343497IPR001471AP2/ERF domain
PfamPF008473.2E-153484IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-203593IPR016177DNA-binding domain
PRINTSPR003672.6E-73546IPR001471AP2/ERF domain
PRINTSPR003672.6E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MASCDSTKSR LTGAGGGGAR QQMAMGKAAV VGRRFVGVRQ RPSGRWVAEI KDSCQRVRLW  60
LGTYDTPEEA ARAYDEAARA LRGENARTNY PYSKRPCGSS VNSFGNGDGN HELSCSSLKA  120
KLSKSLQSVM GRSSESSKSS KNRVSDPLTF ASVFHLRGNG GPQEYRNDTI DKAVQPSIVV  180
PSHEVNQSSS WDSSSLSDSS PDRVTVQSDT VGSDLTEKFS NMERLTCPNQ TMNWDSMLSD  240
HWQGEFTGNT ASSRRKKFKV SSSVMVPPTF SSFPFNDVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1434931474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900171.19e-74dehydration-responsive element-binding protein 2B-like
RefseqXP_021622987.16e-74ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A2G9HFD51e-78A0A2G9HFD5_9LAMI; Uncharacterized protein
STRINGcassava4.1_028498m4e-70(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-09related to AP2 11