PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0152s0048.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 333aa    MW: 37155.6 Da    PI: 5.1569
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0152s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1792138255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y GVr ++ +grWvAeI+d      +++ + g+++taeeAa+a+++a+  l+g
  Kalax.0152s0048.1.p  92 RYIGVRKRP-SGRWVAEIKD------TRKLHTGTYDTAEEAARAYDEAAFMLRG 138
                          799******.7*********......8***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.80E-2391145No hitNo description
PfamPF008471.8E-1292138IPR001471AP2/ERF domain
PROSITE profilePS5103217.46492146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2092145IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-1692146IPR016177DNA-binding domain
SMARTSM003801.8E-2492152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSKLLDNFAT AYQIPALMLI LFLIYPEKLK RDGDVLHKIK AKNPPFVAYT SKFYTQIWMG  60
MVKKKDSSVE EDENQGAPRS VALGGAGQVR KRYIGVRKRP SGRWVAEIKD TRKLHTGTYD  120
TAEEAARAYD EAAFMLRGSN TRRNFWPCAP DSPDCTSALS SRITGLLRAR LRVRNRSPGR  180
SSSGYIPSHQ QDNTVEVAES EPLGRFQETS QLSCHGTNWF ASFYDDPESG EASKAEEENL  240
VYTRFADFEF ADSMGSSSSV YCSPFELPEE ISEPLEPPPP ITNIMGPATT LSETINQMQY  300
ERNFSATLYA YNGVSDCLRL QETLTGLEED GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1285145771Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098777.14e-52ethylene-responsive transcription factor 10-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-10related to AP2 11