PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0048s0285.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 530aa MW: 59055.5 Da PI: 9.2187 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 52 | 98 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ed+ll +av+++ g++Wk+Ia+ ++ gR++ qc +rwqk+l Kaladp0048s0285.2.p 52 KGGWTPREDDLLRQAVEEFKGKSWKKIAEFFP-GRSEVQCLHRWQKVL 98 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 104 | 150 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++ + v+ +G+ W++Ia+ ++ gR +kqc++rw+++l Kaladp0048s0285.2.p 104 KGPWTQEEDDKITEMVAGYGPTKWSLIAKALP-GRIGKQCRERWHNHL 150 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.9 | 8.3e-17 | 156 | 199 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++WT eE++ l +a++ +G++ W+ Ia+ ++ gR+++ +k++w++ Kaladp0048s0285.2.p 156 RDSWTLEEELALMNAHRAHGNK-WAEIAKALP-GRSDNAIKNHWNS 199 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.649 | 47 | 98 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.23E-15 | 49 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-15 | 51 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-16 | 52 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 54 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-13 | 55 | 98 | No hit | No description |
PROSITE profile | PS51294 | 31.055 | 99 | 154 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.03E-30 | 101 | 197 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-16 | 103 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.98E-14 | 106 | 150 | No hit | No description |
Pfam | PF13921 | 1.6E-16 | 107 | 165 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 111 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 155 | 203 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.395 | 155 | 205 | IPR017930 | Myb domain |
CDD | cd00167 | 2.79E-11 | 158 | 201 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-23 | 158 | 205 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MVELCLENKQ SVPTSSSSYS DETVSARSPG FSSPATNSSH RRRTTGPVRR VKGGWTPRED 60 DLLRQAVEEF KGKSWKKIAE FFPGRSEVQC LHRWQKVLDP DLVKGPWTQE EDDKITEMVA 120 GYGPTKWSLI AKALPGRIGK QCRERWHNHL NPEIKRDSWT LEEELALMNA HRAHGNKWAE 180 IAKALPGRSD NAIKNHWNSS LKKKMGFYVA NGSLPPITKT GSPRGVMNMK KQGKRVKFPV 240 RSAGESGSNA EKITGITVCC KLEGDLFETQ ALLEDALYSS GTPSNDSEDA KSIRNQRLCP 300 DIQCSFSGLV FKEKQNCGGP GSMDGTKVTG SEQLHSCLYY EPPKFNIVGR TDSGLLNMPH 360 SDCRHGPPLS PARFHSPLGE KRLDSCIRSP EHILKSAART FQNTPSIFRK RRSETQLQSP 420 STKSDSAEEE LMSEYSLNDG KNLKSDEIRK FESGDELFFG STTHLSSSKD GESYGKSLNT 480 FNRYRLTYKR TAILKSVEKR LDLTFAGLAV KDCSPTTEGS QCTNNFEMT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-65 | 40 | 205 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-65 | 40 | 205 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010654284.1 | 1e-160 | PREDICTED: uncharacterized protein LOC100256181 isoform X1 | ||||
TrEMBL | F6HLC5 | 1e-159 | F6HLC5_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g00360.t01 | 1e-160 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-121 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0048s0285.2.p |