PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV57527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | DBB | ||||||||
Protein Properties | Length: 199aa MW: 22277.1 Da PI: 5.332 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.1 | 7.4e-08 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C +e H KZV57527.1 4 LCDVCESAAAILFCSADEAALCRACDDEVH 33 7***************************99 PP | |||||||
2 | zf-B_box | 29.8 | 1.3e-09 | 52 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ KZV57527.1 52 EVPRCDICESAPAFFYCEVDGSSLCLQCDMIVHVGgkrtHE 92 789***************************99966666776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.5E-7 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.168 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.37E-6 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 4.2E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.1E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.399 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-7 | 52 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.86E-7 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MRTLCDVCES AAAILFCSAD EAALCRACDD EVHMCNKLAS RHVRVGLAEP SEVPRCDICE 60 SAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HERYLLLRQR AEFPGDKPEN LDEPGSVRGN 120 LVQAKKEPSH VSPNPMIVNN IECNGKMENK FIDLNTRPQR VHGRASTNQE QVNNLFNNHH 180 EPENIVDGSF KREPENNEV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV57527.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088488.1 | 1e-103 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551620.1 | 1e-103 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551621.1 | 1e-103 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551622.1 | 1e-103 | B-box zinc finger protein 19 | ||||
Swissprot | C0SVM5 | 1e-77 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A2Z7DEG3 | 1e-145 | A0A2Z7DEG3_9LAMI; B-box type zinc finger family protein | ||||
STRING | Migut.B00176.1.p | 2e-99 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 4e-80 | DBB family protein |