PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV57011.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 215aa MW: 23614.1 Da PI: 8.6028

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV57011.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97	2e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+ ++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA r+ +Pv+Gavg++++++++++q+++e+ KZV57011.1 2 SCNGCRVLRKGCSETCILRHCLqwiesPESQGHATVFVAKFFGRAGLMSFISAVPEKQRPALFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQTAVET 100 6***********************************************************************************************999 PP DUF260 95 all 97 +l+ KZV57011.1 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.872	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR HCLQWIESPE SQGHATVFVA KFFGRAGLMS FISAVPEKQR 60 PALFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQTAVET VLRGGSLKPI AEFLGGASDP 120 DDLSECTNMF TLRDPSLTSR SKLQKRRRLP EDPATIMQLS DLDLSLTPAF QGKKMSPLPG 180 TRRLGSPSMN SEESMTTTCG DHQTRNQIKL LNLFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	148	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV57011.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099355.1	1e-133	LOB domain-containing protein 37-like
Swissprot	Q9SN23	3e-78	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2Z7DB64	1e-158	A0A2Z7DB64_9LAMI; LOB domain-containing protein 37
STRING	XP_009626676.1	1e-108	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-80	LOB domain-containing protein 38