PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV56345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NF-YB | ||||||||
Protein Properties | Length: 202aa MW: 22756.8 Da PI: 5.0751 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 118.5 | 3.1e-37 | 38 | 129 | 2 | 93 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 r+ d++lPi nv++im++vlP + kis+d+ket+qecvsef++f t a++ c+re r+ i+++d+l al + Gf+dy+epl+v+lkkyr KZV56345.1 38 RNPDEYLPIPNVIKIMRQVLPPHVKISDDSKETIQECVSEFVAFFTRTANEICHRECRRIIKPEDVLSALQSKGFDDYIEPLTVFLKKYRTR 129 6789**************************************************************************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-36 | 35 | 133 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.93E-29 | 41 | 129 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.7E-20 | 44 | 107 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.4E-9 | 71 | 89 | No hit | No description |
PRINTS | PR00615 | 7.4E-9 | 90 | 108 | No hit | No description |
PRINTS | PR00615 | 7.4E-9 | 109 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTFWAIPEMM MITQEANSEA THIAIDTSHM TCNHQFKRNP DEYLPIPNVI KIMRQVLPPH 60 VKISDDSKET IQECVSEFVA FFTRTANEIC HRECRRIIKP EDVLSALQSK GFDDYIEPLT 120 VFLKKYRTRG GSNHVPQAVP EAMDQPVLQP QVIQSTASFG STSTLYQADA DELSKILDYL 180 IGDRSARGEG SCGSSLFEPC NN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-38 | 28 | 127 | 2 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV56345.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095575.1 | 1e-41 | nuclear transcription factor Y subunit B-6-like | ||||
STRING | Gorai.009G184800.1 | 2e-38 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 3e-38 | nuclear factor Y, subunit B6 |