PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV54714.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 462aa    MW: 51583.7 Da    PI: 4.9828
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV54714.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2782.9e-85474452373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl..fsevsPilkfshlt 97 
                 ++lLl+cA a++ +d +laq++++ l++ as++gdp+qRla+yf++AL ++ +r  ++  + +  s+ ++++ + +++++++l  ++++ P+++f++ +
  KZV54714.1  47 EKLLLHCASALERNDVTLAQQVMWVLNNVASSTGDPNQRLASYFLKALISKASRVYPTSIN-FDDSTGRDDSfQRRSMSVTELarYVDLIPWYRFGFCA 144
                 689**************************************************95555554.44444443443666666666699************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............ 181
                  N aIl+av+g++rvH++Df+i++++QWp+L++aL++ +eg p+lRi +++    +    +  ++e+g+rL++fA+  +vpfefnv+            
  KZV54714.1 145 SNGAILKAVQGCSRVHVLDFSITHCMQWPTLIDALSKLTEGVPTLRISVLSWRPRVpptLNAPVQEIGQRLTNFAKIKDVPFEFNVIeltglpdesssd 243
                 **************************************************9966668888999************************999988766443 PP

        GRAS 182 ..vakrledl........eleeLrvkp.gEalaVnlvlqlhrll.....desvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealey 263
                   +               +l++L+++  +E+l+Vn++  l  l+      +s++++s+rd +L++++sl P +v+vv++++d   s+ ++ r++ +++y
  KZV54714.1 244 hlH---Y--DllitqmvnDLSTLKLRDdDEVLVVNCQNWLRFLPddqklGNSAEIPSCRDCFLDMIQSLDPCIVTVVDEDCDIgASSGLASRITTCFNY 337
                 321...1..1234444455667777778**********9998883332234566777**************************88999*********** PP

        GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                  +  fd+le+ lp++s +ri +E+  +g++i+ v+   g +r+e  e+ ++ ++r+ + GF++v++se+++k++klll +++  g+ ++++ + l+l+W
  KZV54714.1 338 LWIPFDALETFLPKHSPQRIDYEAD-FGQKIEHVIGFDGVKRTEIFESSSRLSQRMIKNGFSSVAFSEETVKDIKLLLDEHA-SGWGMKKDGDMLLLTW 434
                 *************************.********************************************************.899************* PP

        GRAS 363 kdrpLvsvSaW 373
                 k+++ v +S W
  KZV54714.1 435 KGHNSVYASTW 445
                 *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.93220427IPR005202Transcription factor GRAS
PfamPF035141.0E-8247445IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MKAELQAGNT SSVSLQNPNL FATTSQSSAI SGALKGCLSS IDGACIEKLL LHCASALERN  60
DVTLAQQVMW VLNNVASSTG DPNQRLASYF LKALISKASR VYPTSINFDD STGRDDSFQR  120
RSMSVTELAR YVDLIPWYRF GFCASNGAIL KAVQGCSRVH VLDFSITHCM QWPTLIDALS  180
KLTEGVPTLR ISVLSWRPRV PPTLNAPVQE IGQRLTNFAK IKDVPFEFNV IELTGLPDES  240
SSDHLHYDLL ITQMVNDLST LKLRDDDEVL VVNCQNWLRF LPDDQKLGNS AEIPSCRDCF  300
LDMIQSLDPC IVTVVDEDCD IGASSGLASR ITTCFNYLWI PFDALETFLP KHSPQRIDYE  360
ADFGQKIEHV IGFDGVKRTE IFESSSRLSQ RMIKNGFSSV AFSEETVKDI KLLLDEHASG  420
WGMKKDGDML LLTWKGHNSV YASTWVPQRL AELELWENSL LH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-564044781474Protein SHORT-ROOT
5b3h_B5e-574044727420Protein SHORT-ROOT
5b3h_E5e-574044727420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV54714.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077907.10.0scarecrow-like protein 32
TrEMBLA0A2Z7D5100.0A0A2Z7D510_9LAMI; Scarecrow-like protein 32
STRINGXP_009792999.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-109GRAS family protein