PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV53835.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C3H

Protein Properties

Length: 918aa MW: 98661.9 Da PI: 8.9838

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV53835.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.7e-06	892	914	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ff+ + C+ G++C+++H+ KZV53835.1 892 KPCKFFSSSNGCRKGSNCQYIHV 914 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.911	888	916	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-5	892	913	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-4	892	914	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MPRIKWKCPP KLVLDPSWHV ASGEESFEID NQKDRESTVI EAVYPHLSTI PPSPLISPDM 60 EGKHDDDSQI PLIPLVPIEE AGEIEMSSDA SAPGKTFNCH SASESLTHSR FNSSVSSNPP 120 TGEKSLLDIL RGLEVSDLAV AAGAAATVAA AMKSKHEIDT ELLIKFLADP EMMKRLINVT 180 GIGANSGLTR MHPLPSNSTS DPGIKISLPV SMNQPIPIKE STSDLGMTPA KRARICSPNL 240 VPNWSPAPPR SNSQPLLIQE LNNEARVSAI SRPRTHGTAG TNKPRPLASP SYNENHHARL 300 TDPEMVKTLV NETVIGANSG SRFPSGPKTS THPLSSNSTS DPGIDIFVPV AVNQPIPIKE 360 SATDIGASPA KCARICSPNI VKNGSSAPPR SNSHPPLIQD LMNKAREPAI ARPRTHGATG 420 TNKPITLTSS TTRSYIENHH ARLTDPGMAK TLVNETVIGA DCGSRFLSGP KSTKYPLSSN 480 SPPDPGIDVF VPVAMNQPIP IKESASDLGV TPAKRARICS PNLVKNGSPA PPRSNSHPPL 540 IQDLMNKARE PAIARPRTHG ATGTNKPITL TSSTTRSYIE NHHARLTDPG MGKTLVNETV 600 IGADCGSRFL SGPKSTKYPL SSNSPPDPGI DVFVPVAMNQ PIPIKESASD LGVTPANGVR 660 ICSPNLVKNC NPAQPRSNSH PPLIRDLTNE AREPAFALSR THGTTGTNEP RPLTAPTSSN 720 NENQYARPIN QYRVPNAAPI RPLHPSISKL NVEAASKPMA VQHPPPFFTG TPVSFPPPFS 780 STWRPFMLCM TDGCRALDPA RCLGSNTSLP FAMGLNCNST GTFHSYPFPS MNKLPSPVDD 840 INYSHSLIMQ HGEKNIRNEA NLPKYGPPYN HLRELELAQN TIPLQIDPTV QKPCKFFSSS 900 NGCRKGSNCQ YIHVMSRQ

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MPRIKWKCPP KLVLDPSWHV ASGEESFEID NQKDRESTVI EAVYPHLSTI PPSPLISPDM  60
EGKHDDDSQI PLIPLVPIEE AGEIEMSSDA SAPGKTFNCH SASESLTHSR FNSSVSSNPP  120
TGEKSLLDIL RGLEVSDLAV AAGAAATVAA AMKSKHEIDT ELLIKFLADP EMMKRLINVT  180
GIGANSGLTR MHPLPSNSTS DPGIKISLPV SMNQPIPIKE STSDLGMTPA KRARICSPNL  240
VPNWSPAPPR SNSQPLLIQE LNNEARVSAI SRPRTHGTAG TNKPRPLASP SYNENHHARL  300
TDPEMVKTLV NETVIGANSG SRFPSGPKTS THPLSSNSTS DPGIDIFVPV AVNQPIPIKE  360
SATDIGASPA KCARICSPNI VKNGSSAPPR SNSHPPLIQD LMNKAREPAI ARPRTHGATG  420
TNKPITLTSS TTRSYIENHH ARLTDPGMAK TLVNETVIGA DCGSRFLSGP KSTKYPLSSN  480
SPPDPGIDVF VPVAMNQPIP IKESASDLGV TPAKRARICS PNLVKNGSPA PPRSNSHPPL  540
IQDLMNKARE PAIARPRTHG ATGTNKPITL TSSTTRSYIE NHHARLTDPG MGKTLVNETV  600
IGADCGSRFL SGPKSTKYPL SSNSPPDPGI DVFVPVAMNQ PIPIKESASD LGVTPANGVR  660
ICSPNLVKNC NPAQPRSNSH PPLIRDLTNE AREPAFALSR THGTTGTNEP RPLTAPTSSN  720
NENQYARPIN QYRVPNAAPI RPLHPSISKL NVEAASKPMA VQHPPPFFTG TPVSFPPPFS  780
STWRPFMLCM TDGCRALDPA RCLGSNTSLP FAMGLNCNST GTFHSYPFPS MNKLPSPVDD  840
INYSHSLIMQ HGEKNIRNEA NLPKYGPPYN HLRELELAQN TIPLQIDPTV QKPCKFFSSS  900
NGCRKGSNCQ YIHVMSRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV53835.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5147	7	9