PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV52778.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 484aa MW: 53131.5 Da PI: 9.7232 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 67 | 89 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H KZV52778.1 67 FICEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00036 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ KZV52778.1 144 WKCEKCSKKYAVQSDWKAHSKTC 166 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.84E-7 | 66 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 66 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.845 | 67 | 89 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 5.8E-5 | 67 | 89 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.022 | 67 | 89 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 69 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 88 | 109 | 139 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.5E-5 | 131 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.84E-7 | 139 | 164 | No hit | No description |
SMART | SM00355 | 140 | 144 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MSSDVFSVPI CSTKAFPQDL EQNPNPKSSS NNVPCSAKKR RNLPGTPDPD AEVIALSPGT 60 LMAKNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRAN KDQIKKKVYI CPEKTCVHHD 120 PARALGDLTG VKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE YKCDCGTLFS 180 RRDSFITHRA FCDALAEESA RNITTMGANN MHFRNEHALN GNLMNLQANN NPHLGSGFGG 240 GDPILWGDVN SNTHNKSRLP LWLDHKRNTS TPNSSLFIPP NSSPFPEMMQ MGSNNLFGYG 300 NLSLSPPPSQ SSLKEETFFS KGNAHTNTNT TIYTDSVSSQ LYSSETQIHH TAPKCSNSAP 360 MSATALLQKA AQIGSTKSNN TFFGNTAGVL MSTSSPSSSS TNALSFSNPF AESRSELDQV 420 FGKRPDIAGR LHGVADQNGP TRDFLGVGRG SRGDPFFSPE LAKFVSMNSP GGLSHFTGKS 480 IDEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-36 | 140 | 210 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 1e-36 | 140 | 210 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV52778.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094681.1 | 1e-178 | protein indeterminate-domain 9 | ||||
TrEMBL | A0A2Z7D685 | 0.0 | A0A2Z7D685_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0006s13130.1 | 1e-159 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 2e-99 | C2H2-like zinc finger protein |