PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV49781.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family AP2
Protein Properties Length: 413aa    MW: 45997.8 Da    PI: 6.9233
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV49781.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.61e-10145202156
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkklege 56 
                 s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g+
  KZV49781.1 145 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWGH 202
                 57*******************4444.2344336655.7799999*************997 PP
2AP250.26.3e-16244295155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  KZV49781.1 244 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 295
                 57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-14145211IPR016177DNA-binding domain
PfamPF008471.3E-8145202IPR001471AP2/ERF domain
CDDcd000181.86E-18145211No hitNo description
PROSITE profilePS5103217.398146209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-12146211IPR001471AP2/ERF domain
SMARTSM003801.3E-20146215IPR001471AP2/ERF domain
PRINTSPR003671.5E-6147158IPR001471AP2/ERF domain
CDDcd000181.23E-11244305No hitNo description
SuperFamilySSF541715.56E-18244305IPR016177DNA-binding domain
PfamPF008473.3E-10244295IPR001471AP2/ERF domain
PROSITE profilePS5103219.151245303IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-18245304IPR001471AP2/ERF domain
SMARTSM003807.5E-31245309IPR001471AP2/ERF domain
PRINTSPR003671.5E-6285305IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAPESNWLSF SLQSSMDQML QSSNSTDHTH NYFGFSDNFY AVNGWPNQRS QTMCPEAENH  60
YFSNFMDSSA QAPPKLEDFL GGDSTETQDS TLTHIYDNHQ TAAAAAAAYF SGGDLQDLKA  120
MTEFEAFSAN SGCKKIADTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQG  180
GYDKEDKAAR AYDLAALKYW GHNATTNFPM SNYTKELEEM KNSTKQEFIA SIRRKSSGFS  240
RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA IKFRGVNAVT  300
NFEMSRYNIE AINRSSLPIG GTAKRLKSTL EVAGDQKIPY SNILQSPCSG GGGGSIDFAT  360
FPPVSHIPCG VPLDLSVPYY HHSFFHHLQT SNPLVPDASS VVPELFIWPN ESN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV49781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362839.11e-173LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ6J9N81e-122AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A2Z7CRU00.0A0A2Z7CRU0_9LAMI; Uncharacterized protein
STRINGXP_009603183.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-123AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]