PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV49743.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

TALE

Protein Properties

Length: 665aa MW: 72619 Da PI: 6.7333

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV49743.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.5	1.2e-09	499	536	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + KZV49743.1 499 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 536 665569******************************88 PP
2	BELL	105.3	4.2e-34	364	434	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e+q++k+kLls+l+eVd++Y++y+ q+q+v++s e+v+g g+a pYt lA++a+S+hFr+Lk+ai++q+ KZV49743.1 364 RVEHQRRKVKLLSMLDEVDRKYSRYCGQMQMVMNSLETVMGSGAASPYTWLAQRAMSKHFRSLKEAISGQL 434 789*****************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.4E-51	286	432	IPR006563	POX domain
Pfam	PF07526	1.3E-41	292	431	IPR006563	POX domain
PROSITE profile	PS50071	12.876	477	540	IPR001356	Homeobox domain
SMART	SM00389	5.8E-10	480	544	IPR001356	Homeobox domain
CDD	cd00086	1.27E-13	480	541	No hit	No description
SuperFamily	SSF46689	1.45E-17	481	547	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-28	483	546	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	497	536	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MSQDYHQGVF SFVNGLERSS VQQQDKLRVQ GFEHCVEDEE LGGVPVYEAG GMLSEMFKYF 60 PPGESTMAAE LLKNRISAES YGDTRPSLPG DWFPNRQEVV VTARGLSPLV DCKNQISSVN 120 AADPTAIMQL FLMNPQQQRS PSSSPSDPPT VSTASSLHML LPDTSWNSPS LVGFHNTAAG 180 GGFGQNTWGQ DSRNGINPNH TAGFLEGRGL SLSLSSSQQQ LEAGKGDDVR MQAGNADMIL 240 FGHTGVSDPP HYQLKNPAAC GGGDAFHLQS GVDQSLQMQA GLGSSFGAFH TLQNSSYTRS 300 ARELLEEFCS VGSIGHLKKN KRSKLNNNAN QISSDQPAGA TKGYGRGNIS YMPKDLPPPS 360 ASDRVEHQRR KVKLLSMLDE VDRKYSRYCG QMQMVMNSLE TVMGSGAASP YTWLAQRAMS 420 KHFRSLKEAI SGQLRLSCEV LGESDAAASG LTKGETPRLR ILEQSLRQHR GIHQMEQQAW 480 RPQRGLPDRS VNVLRAWLFE HFLNPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP 540 MVEQMYQKES KEESAEQEQD QSSNSPISDN DKTSTRIAAD SSSASLPEIS LPAANIPRTC 600 HQAGVVSGAD DYGISNHPLN GGLDSTLISL GTTASDVISL TLGLRHVGNL PEKSQFRLEN 660 LGDVN

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MSQDYHQGVF SFVNGLERSS VQQQDKLRVQ GFEHCVEDEE LGGVPVYEAG GMLSEMFKYF  60
PPGESTMAAE LLKNRISAES YGDTRPSLPG DWFPNRQEVV VTARGLSPLV DCKNQISSVN  120
AADPTAIMQL FLMNPQQQRS PSSSPSDPPT VSTASSLHML LPDTSWNSPS LVGFHNTAAG  180
GGFGQNTWGQ DSRNGINPNH TAGFLEGRGL SLSLSSSQQQ LEAGKGDDVR MQAGNADMIL  240
FGHTGVSDPP HYQLKNPAAC GGGDAFHLQS GVDQSLQMQA GLGSSFGAFH TLQNSSYTRS  300
ARELLEEFCS VGSIGHLKKN KRSKLNNNAN QISSDQPAGA TKGYGRGNIS YMPKDLPPPS  360
ASDRVEHQRR KVKLLSMLDE VDRKYSRYCG QMQMVMNSLE TVMGSGAASP YTWLAQRAMS  420
KHFRSLKEAI SGQLRLSCEV LGESDAAASG LTKGETPRLR ILEQSLRQHR GIHQMEQQAW  480
RPQRGLPDRS VNVLRAWLFE HFLNPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP  540
MVEQMYQKES KEESAEQEQD QSSNSPISDN DKTSTRIAAD SSSASLPEIS LPAANIPRTC  600
HQAGVVSGAD DYGISNHPLN GGLDSTLISL GTTASDVISL TLGLRHVGNL PEKSQFRLEN  660
LGDVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	486	544	5	63	Homeobox protein Meis2
3k2a_B	1e-15	486	544	5	63	Homeobox protein Meis2
4xrm_A	9e-16	486	544	5	63	Homeobox protein Meis2
4xrm_B	9e-16	486	544	5	63	Homeobox protein Meis2
5bng_A	8e-16	486	544	1	59	Homeobox protein Meis2
5bng_B	8e-16	486	544	1	59	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV49743.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099269.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-126	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A2Z7CSH1	0.0	A0A2Z7CSH1_9LAMI; Uncharacterized protein
STRING	Migut.H00514.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-121	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]