PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV41584.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

G2-like

Protein Properties

Length: 342aa MW: 38483.9 Da PI: 9.1336

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV41584.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.3e-32	161	214	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ KZV41584.1 161 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 214 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.49E-15	158	215	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	159	215	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-23	161	214	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-7	162	213	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK SSSNWIRNED EMDLSFWKRA LDSRNPVSSM DTPSFDLSLS 60 KPTKDTGFST HHRHLLHGAA ASTAHLLHQN PNPNIFQQEL NFLRPIRGIP VYQNPPQAFP 120 FAPNTHNNNH HQNINPCLQA HGLMRSRFLS RFPAKRSMRA PRMRWTTTLH ARFVHAVELL 180 GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKSTDR AAATSGHSDQ FENGSSGDTS 240 DDLLFDIPSS KRSTPEVTNY QQGLTQNNTN QEKGYHGLWS NSSSWEALLH GKQRDCGGNI 300 QSLEKMEPKC SSYERISDVS SSSISETSPK KPNLEFTLGR PQ

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK SSSNWIRNED EMDLSFWKRA LDSRNPVSSM DTPSFDLSLS  60
KPTKDTGFST HHRHLLHGAA ASTAHLLHQN PNPNIFQQEL NFLRPIRGIP VYQNPPQAFP  120
FAPNTHNNNH HQNINPCLQA HGLMRSRFLS RFPAKRSMRA PRMRWTTTLH ARFVHAVELL  180
GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKSTDR AAATSGHSDQ FENGSSGDTS  240
DDLLFDIPSS KRSTPEVTNY QQGLTQNNTN QEKGYHGLWS NSSSWEALLH GKQRDCGGNI  300
QSLEKMEPKC SSYERISDVS SSSISETSPK KPNLEFTLGR PQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-17	162	216	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-17	162	216	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-17	162	216	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-17	162	216	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-17	162	216	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-17	162	216	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-17	162	216	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-17	162	216	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-17	162	216	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-17	162	216	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-17	162	216	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-17	162	216	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV41584.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010663129.1	1e-144	PREDICTED: probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	7e-90	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2Z7C3T4	0.0	A0A2Z7C3T4_9LAMI; Uncharacterized protein
STRING	VIT_02s0012g01940.t01	1e-142	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-85	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]