PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV40315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C3H | ||||||||
Protein Properties | Length: 414aa MW: 47482.5 Da PI: 6.4628 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.5 | 7.2e-06 | 7 | 30 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C++ C+FaHg KZV40315.1 7 YKTRLCLLYQR-GRCSR-QYCNFAHG 30 9**********.*****.*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-9 | 3 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.61 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MVEKKLYKTR LCLLYQRGRC SRQYCNFAHG SAELRGSFNG RQEEYHGRDL RESLGRNRSP 60 LRKFSPRRDD RARHSSRGNS PRSPMKRIDR NHRKRQRLDG NHDYSGSMRM SDGNEDQNRE 120 RTWAPSDSKV HLDGQLRHVL TELKILDSDK QKLEIFLEEK VQEADALTLK IHDLEIQLSK 180 EKEEAKRSNA QILKLGDQLD FNAARQGSNE EDSKINTVSD DETGVNNASP LNGFRINSSP 240 NQKKSREYPE AHDASNQVNI VKGDRTEIRG TRREKPSRQT EHREQLIWSK ESDANNRCDP 300 LAYEDKLKKG TYQPRDVASA DKAPEMGPML PSTGLAAHAL DEYIEDHEMD EKFRVTGAAS 360 TRTEPDANMK VTVLPFPPPP PPPLPQNVYS QYEGDDEHVE IDEVDEETVE VDII |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV40315.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100293.1 | 1e-144 | zinc finger CCCH domain-containing protein 13 isoform X2 | ||||
TrEMBL | A0A2Z7C7N1 | 0.0 | A0A2Z7C7N1_9LAMI; Zinc finger CCCH domain-containing protein 13 | ||||
STRING | Migut.M00396.1.p | 5e-99 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6123 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 1e-30 | C3H family protein |