PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40315.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 414aa    MW: 47482.5 Da    PI: 6.4628
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40315.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.2e-06730126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ykt+lC  ++r G C++   C+FaHg
  KZV40315.1  7 YKTRLCLLYQR-GRCSR-QYCNFAHG 30
                9**********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.4E-9335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.61632IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MVEKKLYKTR LCLLYQRGRC SRQYCNFAHG SAELRGSFNG RQEEYHGRDL RESLGRNRSP  60
LRKFSPRRDD RARHSSRGNS PRSPMKRIDR NHRKRQRLDG NHDYSGSMRM SDGNEDQNRE  120
RTWAPSDSKV HLDGQLRHVL TELKILDSDK QKLEIFLEEK VQEADALTLK IHDLEIQLSK  180
EKEEAKRSNA QILKLGDQLD FNAARQGSNE EDSKINTVSD DETGVNNASP LNGFRINSSP  240
NQKKSREYPE AHDASNQVNI VKGDRTEIRG TRREKPSRQT EHREQLIWSK ESDANNRCDP  300
LAYEDKLKKG TYQPRDVASA DKAPEMGPML PSTGLAAHAL DEYIEDHEMD EKFRVTGAAS  360
TRTEPDANMK VTVLPFPPPP PPPLPQNVYS QYEGDDEHVE IDEVDEETVE VDII
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40315.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100293.11e-144zinc finger CCCH domain-containing protein 13 isoform X2
TrEMBLA0A2Z7C7N10.0A0A2Z7C7N1_9LAMI; Zinc finger CCCH domain-containing protein 13
STRINGMigut.M00396.1.p5e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA612399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-30C3H family protein